Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq67 181 7e-41 >seq67 Length=90363 Score = 181 bits (200), Expect = 7e-41 Identities = 418/618 (68%), Gaps = 14/618 (2%) Strand=Plus/Minus Query 97006 GTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACA 97065 || ||||| || | || || ||||| ||||| | | || | || | ||| |||| Sbjct 88687 GTGGGGAATGGTCGCGGGGTGCGCGTTAGCTGTTTTTGAAGCGGCTCTACGTGGTTCAGG 88628 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 || | ||| ||||| || | | |||| |||||||| ||||| ||| ||| || ||| Sbjct 88627 TATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGG 88568 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || | | | || | ||| | ||| || || ||||| || ||||| || || ||||| Sbjct 88567 GCCACAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATG 88508 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTC 97245 ||||| || | || || | |||||| || | || ||||| ||| |||||||||| Sbjct 88507 TCAGCCGAACGCTGGTACATCTGACACGATAACTCGCCATCCGCCACGTAAAACTGACAA 88448 Query 97246 AATACATGACAGGGGGGCAACGCCATTT--TTGGAACATCTAAGACATTCCAAGCACACA 97303 || | ||||| || |||| |||||| | ||| | ||| |||||| ||| ||| Sbjct 88447 AACATGTGACATGGTGGCAGCGCCATCTCATTG--AGATCCGCTGGATTCCACGCAGACA 88390 Query 97304 TCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGAT 97363 || || | | ||||| ||||||||| ||| | | || | || | ||||| Sbjct 88389 ACACAATCCGACGGTCGGTCGGGTTTGTGCGTAGTTTGTGGATCACCTCAGCAAGTTGAT 88330 Query 97364 CAACGCCTTCTCCACCATAAT-TG--TGCTTAAGACCTTGATATTCTGCTCCAAAATGCC 97420 | || || | |||| || | || ||| || || || || | |||||||| || | Sbjct 88329 CCACCCCCTGTCCAGTGTAGTCTGCATGCATAT--CCGTG-TACTTGGCTCCAAAGTGAC 88273 Query 97421 TCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAA-CCAAGC 97479 ||| ||||||||||| || ||||| ||||||||| |||| || || | | ||| | Sbjct 88272 GCCACTGGAATCCATACACTGGTCCCAGGTCTCCTACTTCCCTCG-ACTGCAGTCCACGA 88214 Query 97480 TTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAGATGCTGCAAG 97538 | || ||||| | |||||||| ||||||| || || | || ||||||| Sbjct 88213 CTGTCCAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGC 88154 Query 97539 CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCA 97598 | | || || ||| || || || ||||||| ||||| ||| | ||||||||||| Sbjct 88153 GTATGCGCACTC-GTATCCCCACTAATGAACCACAGTAATTCCTCCGCCACACCTCTCCA 88095 Query 97599 AAATACTCTCTTAGTTGT 97616 |||||||||||||| || Sbjct 88094 GAATACTCTCTTAGTCGT 88077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346775251289900