Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1102 114 3e-20 seq7 114 3e-20 >seq1102 Length=3282 Score = 114 bits (126), Expect = 3e-20 Identities = 262/386 (68%), Gaps = 14/386 (4%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || ||| | ||| |||| ||||| || ||||||||||| || || || |||| Sbjct 579 CTACCCCACTTGTTGTTCTACGGCCCTCCAGGCACAGGCAAGACATCTACTATTGTGGCT 638 Query 254061 CTGGCCCG--AACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 | | | ||| || |||||| || || || | ||| | || ||||| || Sbjct 639 GTAGGGAGGCAACTCT-TTGGGCCGGACTTCCGCAAGAACGGCCGCTTCCTGGAGCTCAA 697 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 ||| || ||||| || || | | || || || || ||| |||||| ||| || || Sbjct 698 CGCGTCGGACGATCGTGGTATTAAGGTGGTGCGTGAGAAGGTCAAGAGCTTCGCCCAGGG 757 Query 254177 GTCGATTT-CGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGG 254235 | ||| | || | | | ||| || || |||||| || | | |||||||||| Sbjct 758 TGCCATTAGCAGCGCT---AGTGGACTG-CCACCCTTCAAGATCATCGTACTGGACGAGG 813 Query 254236 CGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCG 254295 | ||| ||||||||| ||||| ||||| || || || || | |||||||| ||||| Sbjct 814 CAGACTCCATGACGGGAGACGCACAGTCAGCACTGCGTCGTATGATGGAGAACTACTCCA 873 Query 254296 TTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGC 254353 || ||||| || || ||| | || |||||||| |||| ||||| | || |||| Sbjct 874 AGGTCACGCGCTTCTGTCTGATCTGTAACTACGTAAGTCG--TATCATTGAGCCTGTGGC 931 Query 254354 TTCTCGGTGCGCCAAGTTTCGATTCA 254379 || || || |||||||| || |||| Sbjct 932 CTCCCGTTGTGCCAAGTTCCGCTTCA 957 >seq7 Length=236454 Score = 114 bits (126), Expect = 3e-20 Identities = 262/386 (68%), Gaps = 14/386 (4%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || ||| | ||| |||| ||||| || ||||||||||| || || || |||| Sbjct 235876 CTACCCCACTTGTTGTTCTACGGCCCTCCAGGCACAGGCAAGACATCTACTATTGTGGCT 235817 Query 254061 CTGGCCCG--AACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 | | | ||| || |||||| || || || | ||| | || ||||| || Sbjct 235816 GTAGGGAGGCAACTCT-TTGGGCCGGACTTCCGCAAGAACGGCCGCTTCCTGGAGCTCAA 235758 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 ||| || ||||| || || | | || || || || ||| |||||| ||| || || Sbjct 235757 CGCGTCGGACGATCGTGGTATTAAGGTGGTGCGTGAGAAGGTCAAGAGCTTCGCCCAGGG 235698 Query 254177 GTCGATTT-CGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGG 254235 | ||| | || | | | ||| || || |||||| || | | |||||||||| Sbjct 235697 TGCCATTAGCAGCGCT---AGTGGACTG-CCACCCTTCAAGATCATCGTACTGGACGAGG 235642 Query 254236 CGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCG 254295 | ||| ||||||||| ||||| ||||| || || || || | |||||||| ||||| Sbjct 235641 CAGACTCCATGACGGGAGACGCACAGTCAGCACTGCGTCGTATGATGGAGAACTACTCCA 235582 Query 254296 TTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGC 254353 || ||||| || || ||| | || |||||||| |||| ||||| | || |||| Sbjct 235581 AGGTCACGCGCTTCTGTCTGATCTGTAACTACGTAAGTCG--TATCATTGAGCCTGTGGC 235524 Query 254354 TTCTCGGTGCGCCAAGTTTCGATTCA 254379 || || || |||||||| || |||| Sbjct 235523 CTCCCGTTGTGCCAAGTTCCGCTTCA 235498 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||| ||||| ||||| ||| Sbjct 187395 ACGCCTGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGA 187454 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || |||||||||||||| || || ||||| | |||||| | |||| || ||| Sbjct 187455 GAGATCATGTCCATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGC 187514 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACT 157400 | |||| | ||| ||||| |||| ||||||| Sbjct 187515 GAATACAGCAGGCGGTCTGCCACGAACTCAATGTACT 187551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073737921701760