Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq237 293 2e-74 seq7 168 6e-37 seq1125 122 8e-23 >seq237 Length=40644 Score = 293 bits (324), Expect = 2e-74 Identities = 1212/1892 (64%), Gaps = 39/1892 (2%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| ||||||| || ||| ||| | || |||||||| Sbjct 3084 CTTGTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCC 3025 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| || ||| |||||||||||||||| || ||||| || | || | | |||| Sbjct 3024 CGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATGTAAGCTTGCTTTTTGTCGG 2965 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | || | ||||||||||||| ||| | || || ||||| || | Sbjct 2964 TTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACCACGATCCGCAGA 2905 Query 22285 CATATTTATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 || | | ||| || | | || ||||| || ||||||||| | | |||| | Sbjct 2904 CAGGTCCAG-AATCGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGATGT 2846 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 ||| || || | |||| || || ||| | | | |||| || | Sbjct 2845 GGTCCGGAATGGAGCTCACATTCTGCACCGAACCGCCGTCATTCAAGATCTGGTTACGCA 2786 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | ||||| ||| | | ||| || || | ||| | |||||| | Sbjct 2785 CCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAGGTACTTGTTCACGATGG 2726 Query 22464 GAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 |||||| || | |||| |||||||| | ||| ||||| || ||||||||||||| ||| Sbjct 2725 TAAACTCTCCCG-CAAGCACGCGGCGGTTGTACATGTTAGAGGTGAACGGTTCGATAGAC 2667 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || || || || || ||||| || || || || |||||||||||||| | ||| ||||| Sbjct 2666 TCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGGCGCGACCAGGAGCGAA 2607 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC---G 22639 || | || ||||| ||| | || ||| ||| | ||||||||||||| | | Sbjct 2606 TTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCAGTCCCACAGACCGGAG 2547 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699 || ||||| || || |||||||||| | || || | || || || || || Sbjct 2546 GAAGGCGTGAC---GTTCCACATATCGAACTGGAAGATACCCTTGCTGGCAGGCGAACCC 2490 Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCG 22759 | | | || |||||||| || || || ||| ||||| || ||||| | || Sbjct 2489 TGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTTCCATTGACGTCTCCATAGAAGCG 2430 Query 22760 TAATATATAGTCTCGAAGATTTTCTTGTTCAATTC-GGCGGCGGCGACGCTTTCGTACGG 22818 || || || ||||||||||| |||||||| | || ||| | || || ||| ||| Sbjct 2429 TAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCCTCCG-GACTCTCGAACGC 2371 Query 22819 CATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTT 22878 | ||| | | ||| |||||||| | ||||| || || ||||| | || |||| Sbjct 2370 AAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCACACCAATACCAACAGGACGGTG 2311 Query 22879 TTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTT 22938 || || || ||||| | || || | || ||||| |||| Sbjct 2310 ACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTCGATGACCTTGTT 2251 Query 22939 CAAGTT---TCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC 22995 || ||| | || |||| || || || | ||| | | ||| | Sbjct 2250 CAGGTTGCGTGTGATCAC-CTTGACGACAT--CATACAGCTTCTTGTAGTTGAATACGGC 2194 Query 22996 CGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTC 23055 || | |||| |||||| || || | || || | ||||| ||||||||||| || Sbjct 2193 --GTTCT-CAACGAACTTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACCTCATC 2137 Query 23056 TTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATT 23115 ||||| ||||| | | ||| || | ||||| | |||||||| | || Sbjct 2136 AGGCGACGTATACTCCATCACTTCACAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTT 2077 Query 23116 GCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTC 23175 ||| || || || ||| | |||||||| | |||| | ||| ||||||||| Sbjct 2076 CTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTC 2017 Query 23176 GACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC-C 23234 | ||||| || | || || ||||| ||||| | | ||| || | | Sbjct 2016 AATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGA-TTGTCTTGCGGGCGC 1958 Query 23235 TGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCA 23294 |||||| ||||||||| | ||| || || || || | || | || ||| || Sbjct 1957 GGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACA 1898 Query 23295 GGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTC 23351 | ||||| | | | ||||| | | ||||||| | | |||| || || || Sbjct 1897 GACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTT---GCCATTGGCCTCCACACGCT 1841 Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || |||||||| | ||| ||||| ||||||| || || || || | ||| | Sbjct 1840 TCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCTCGT 1781 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | || |||||| || |||||| || || ||||| || || |||||||| || || | Sbjct 1780 TACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGAT 1721 Query 23472 AAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGT 23531 ||| ||||| | ||| | ||| || ||||| || |||||||| ||||| | || Sbjct 1720 AAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACGTGCCGTATCGT 1661 Query 23532 TGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCG 23591 | |||||| ||||| || | || |||||||||| |||| | || ||| | | Sbjct 1660 TAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCG--TTCG--TGCCGCGGATG 1605 Query 23592 AACCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGAT 23647 | || || ||||| | |||||| | || || |||||||| || | || || Sbjct 1604 TAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCCACTTGGAG 1545 Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707 || ||| || |||||||||||||| || ||||| || || ||| || | | || Sbjct 1544 ATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCC 1485 Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 | |||||| |||||||||| ||| | || ||| | || |||||| || ||| || Sbjct 1484 AACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGTGGGGGTG 1425 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG-TC 23826 ||||| || ||| || | |||||| || | ||| || || | || || | ||| || Sbjct 1424 GCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTC 1365 Query 23827 CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC 23886 ||| ||| || || | || |||||||| ||||| | || || | || ||| Sbjct 1364 GTCT-TGTGGATGCCTAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCACTTT 1306 Query 23887 GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTT 23946 ||||| | ||| |||||| | | || || ||||| |||||||| || || | Sbjct 1305 GCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGTATTC 1246 Query 23947 AAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 |||||| || || || | |||||||| |||| Sbjct 1245 AAAGTCTCGGTCATGGATAATGGCCGAGTTCA 1214 >seq7 Length=236454 Score = 168 bits (186), Expect = 6e-37 Identities = 546/834 (65%), Gaps = 14/834 (2%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| ||||| || || || ||||| | ||||| | ||| Sbjct 188251 GACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGAC 188192 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | || || | || |||| ||||| ||| ||| | | || || || Sbjct 188191 TTGGTACACGACCTCAAGGACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAG 188132 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| || || ||||| ||||| || || |||||||| ||| | | | Sbjct 188131 CACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGAACGAGAACCTGG-CTATGAA 188073 Query 57747 TTTTCACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 ||| ||| ||||| || ||| | ||||| | ||||| ||||| || ||| | ||||| Sbjct 188072 CTTTAGCAATGAAGTACAGGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAAATTGCCAT 188013 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 ||| ||| | || ||||| |||| ||||| ||||| || |||||| | |||||| | Sbjct 188012 TGAGAACATCCACTCAGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGT 187953 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCG-CCAAGAAGGCAG 57924 ||||| ||| | || || || || || |||| | | |||||||||| | Sbjct 187952 GGAGAAGGACCACCTGCTGCGTGCAATTGAGACCAT-CCCGTGTGTGACCAAGAAGGC-G 187895 Query 57925 AGT-GGTCAATCAAATGGATAAAAAGCGCCACGG-CCACGTTCGCCGAGAGGCTAATCGC 57982 ||| || | | | |||| | | || | | || | | | | ||| | || | || Sbjct 187894 AGTTGGGCGCTAAGATGG-TGCGACCCGAAAGTGTCCTCATACCCGGAGCGTCTTCTGGC 187836 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 || || || || || || || ||||| |||||| |||| | || || ||| | || Sbjct 187835 ATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAA 187776 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| || || || ||||| || |||| || ||||||| | || || || || || Sbjct 187775 GAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAGG 187716 Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGA 58162 | | || || || ||||| || || ||||||| | | || | || | | || | | Sbjct 187715 TATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACCAAGCTGCCGGAGCA 187656 Query 58163 TCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGC 58222 || | || |||||| || || || ||||||| | |||||||| | ||| | Sbjct 187655 GCGTGTGCACGAGATTATCCGTGACGCTGTGAAGATCGAACACGAGTTTGTGAGCGACTC 187596 Query 58223 CCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGT 58282 || || |||| || |||| |||||| | | |||| ||||||||||||| || Sbjct 187595 GCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGT 187536 Query 58283 TGCCGACAGACTTTTGCTCGAACTGATTGGAGAG--CGTCAT-TACAACACGAAAAATCC 58339 || ||| | | |||| | | |||| | | | || |||||| || || || Sbjct 187535 GGCAGACCGCC---TGCTGTATTCGCTTGGTGTGTCCAAGATCTACAACGTCAAGAACCC 187479 Query 58340 GTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 |||||| | ||| | ||||||| || |||||||||| ||||| ||||| || Sbjct 187478 GTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACTAACTTCTTCGAGAA 187425 >seq1125 Length=3167 Score = 122 bits (134), Expect = 8e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| ||||||| || || Sbjct 659 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 718 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| ||||| | || | ||||| |||| ||| ||||||||| || | ||||| || Sbjct 719 GTCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGA 778 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||||||| || ||||| ||||| ||| | || ||| Sbjct 779 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445754865794400