Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq118 120 3e-22 >seq118 Length=64686 Score = 120 bits (132), Expect = 3e-22 Identities = 236/347 (68%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 ||| || ||||| ||||| || || | || | | | || ||||| | |||||||| Sbjct 16728 CACTCCAGTGGAGCCGAAGCCTCCAGTACCACGTGCTGTCTCGTCGATCTCTGCCACCTC 16787 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 ||| | || ||| || | ||| |||||| || || | |||||| || ||| Sbjct 16788 TTCGATCTCCGGGTACTCGATTTTCTCTAAGATCAATTGAGCCACTCGGTCTCCACGCTT 16847 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || ||| || | | | ||| |||||| || | ||||||||| || ||||||||| Sbjct 16848 GACTGGGAAGTCTTCG--GTCGAGTGGTTGAATAGAATCACGCCCACATTCCCGCGGTAG 16905 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || ||||| || ||||| ||||| ||| ||||| | ||||| || || || ||||| Sbjct 16906 TCAGCGTCAATGACGCCTGCGCCAGTGTCAATGAACTTCTTGAGTGCGAGACCAGAGCGA 16965 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACT 5797 || || || ||| ||||||| || || || || || || ||| || |||| | Sbjct 16966 GGCGCTACACGGGCGTAGCAGCCGTCTGGTAGAGCGATGGCCAAGTCTGTTTTGACCAGT 17025 Query 5798 CGCCGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTC 5844 | || || ||||||| || | |||| |||||||| ||||||| Sbjct 17026 CCTTTGCCTCCAGCAGGGATGACGGCGTCGTAAGCGCTGGAGAGGTC 17072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430043550533840