Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq67 140 2e-28 >seq67 Length=90363 Score = 140 bits (154), Expect = 2e-28 Identities = 327/484 (68%), Gaps = 21/484 (4%) Strand=Plus/Minus Query 25425 AGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCC 25484 ||||| |||||||| | |||||| ||||| || || || | | |||||| ||| || || Sbjct 88648 AGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGGATAAATTCGCCA 88589 Query 25485 GGTTCTAGCCCGGTAACGTAAGCCATCATGTA-CGTGAGGAGAAAGTAGCTGGCGATGTT 25543 |||| | || | || | |||| || || ||| || || || ||||||||||| Sbjct 88588 GGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTT 88530 Query 25544 AAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTT 25603 || || || |||| |||||||| || || | |||||| | ||||||||| | ||| Sbjct 88529 GAACGGCACGCCGAGGCCCATGTCAGCC-GAACGCTGGTACATCTGACACGATAACTCGC 88471 Query 25604 CGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCA--- 25660 | || ||||||||||||||| | ||| || || || || || || | || Sbjct 88470 CATCCGCCACGTAAAACTGACAAAACATGTGACATGGTGGCAGCGCCAT----CTCATTG 88415 Query 25661 AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCT-TCTGGGTTGTCCCTGAT 25718 || || || ||||| || ||| | || | | ||| || || |||| | | | Sbjct 88414 AGATCCGCTGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGGTTTGTGCGTAGT 88355 Query 25719 AAG---ATCCGCGGTGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCA 25774 | ||| | | ||| | |||||||||||| || | ||||||||| || Sbjct 88354 TTGTGGATCACC-----TCAGCAAGTTGATCCACCCCCTGTCCAGTGTAGTCTGCATGCA 88300 Query 25775 TGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTC 25834 | |||||||||| ||||| || | | ||||||||| || ||||| ||||| ||||||| Sbjct 88299 TATCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATACACTGGTCCCAGGTCTC 88240 Query 25835 CATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCC 25894 | ||||||| || | || | | |||||| | |||| || |||||| | |||| Sbjct 88239 CTACTTCCCTCGACTGCAGTCCACGACTGTCCAAATACTCTCGCGATCCATTGCCATCCC 88180 Query 25895 AGAT 25898 |||| Sbjct 88179 AGAT 88176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340129018966110