Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq237 302 1e-76 seq67 120 8e-22 >seq237 Length=40644 Score = 302 bits (334), Expect = 1e-76 Identities = 1050/1628 (64%), Gaps = 33/1628 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||||| || || ||| ||||||||| || | |||||| ||||||| Sbjct 1414 TTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCG 1473 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | ||| |||| || || || || || || | |||||| || || | Sbjct 1474 TGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAG 1533 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || |||||| ||||| || ||||| | || ||||| | || || Sbjct 1534 TGTGCGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCT 1593 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | || || || | | |||||||| || Sbjct 1594 ACTAACAGCTACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGA 1653 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || |||| || | ||||| |||||||||||||| || ||||| || | ||| Sbjct 1654 GTGTTTAACGATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTT 1713 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||||| || || || || ||| | |||||||| | || || || || ||| Sbjct 1714 GCGATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAAC 1773 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| ||||||||||| |||||||||| || ||||| | || | Sbjct 1774 CATGGTAACGAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTA 1833 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||||| |||||||| | || ||| | || || || |||| ||| Sbjct 1834 TTCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCC 1893 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||||| | ||| ||||| || || | | | || | || ||||| || || Sbjct 1894 GGTCTGTACGAGTGCTGGGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAA 1953 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || || || |||||||| || || |||| ||||| || || |||| ||||| Sbjct 1954 GGCCGCGCCCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAG 2013 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| || || | ||||| ||||| || | |||||||||||| || ||| Sbjct 2014 ATTGAGACGGGCGTGCCTTTCATGTTATACAAGGACGCCGCCAACCGCAAGTCTAATCAG 2073 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| || || |||| ||||||| | || || | || || || || | Sbjct 2074 CAGAACCTCGGCACGATTCGCTCGAGCAACTTGTGCTGTGAAGTGATGGAGTATACGTCG 2133 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--AAAAG 364324 || || ||| ||||| || ||| | ||||| | ||||| || ||| || | || Sbjct 2134 CCTGATGAGGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGTTGAGAAC 2193 Query 364325 ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCAATCTC 364383 ||| || || || || | || ||||| || | | || | || |||| || Sbjct 2194 GCCGTA--TTCAACTACAAGAAGCTGTATGATGTCGTC-AAGGTGATCACACGCAACCTG 2250 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGT 364443 ||||||| |||||| || || || || || ||| || ||| || |||||| Sbjct 2251 AACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAATTCCAACATGCGT 2310 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG 364503 || || || ||||| ||||||| |||||||| || |||| ||| || | | | | Sbjct 2311 CACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATCCTCATGGACTTT 2370 Query 364504 GCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563 || || || || || || |||| || || ||| | ||||| || || || || | Sbjct 2371 GCGTTCGAGAGTCCGGAGGCGCGTGAGCTCAACAAGAATATCTTCGAGACCATCTACTAC 2430 Query 364564 GCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 || | ||| | || || |||| | ||| |||| |||| || Sbjct 2431 GCTTCTATGGAGACGTCAATGGAACTGGCCACGGAATTGGGCCCGTACGAGACTTTCCAG 2490 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTC 364683 || || ||| |||| | |||||||| ||| | ||||| |||||||| || || Sbjct 2491 GGTTCGCCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGAACGTCACGCCTTC-CTC 2549 Query 364684 CG----ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTC 364739 || ||| |||||| | |||| || || ||| | || ||||| || Sbjct 2550 CGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAACGGCCTGCGCAATTC 2609 Query 364740 CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTG 364799 ||| | ||||| ||||| ||||| ||||| |||||||||||||| || ||||||| Sbjct 2610 GCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTCGGTAATAACGAGTC 2669 Query 364800 CTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 |||||||||| || || | || ||||| || ||| | ||||| ||| | | Sbjct 2670 TATCGAACCGTTCACCTCTAACATGTACAACCGCCGCGTGCTTGCGGGAGAGTTTACCAT 2729 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAA 364919 || || |||||||| | || || || || | || |||||| | || Sbjct 2730 CGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGGGCTCCTGAGGTGCG 2789 Query 364920 GAACTATATC----ATCGCCGCTAATGGTTCTGTGCAGAACAT----TCCAGGATTTCCA 364971 ||| | ||| || | || ||||| |||||||| | |||| |||| Sbjct 2790 TAACCAGATCTTGAATGACGGC----GGTTCGGTGCAGAATGTGAGCTCCA----TTCCG 2841 Query 364972 GAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAACTC--TCATT 365028 || | | ||| | ||||| || || ||||| || || || ||| || | | Sbjct 2842 GACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGTCGATTCTG 2898 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG 365088 || || | || ||||| ||||| | ||||||||||| |||||| | ||| | ||| Sbjct 2899 GACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAACATTCACATC 2958 Query 365089 ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTT 365148 | | || || |||||||||||| ||||| || |||| |||||| || || Sbjct 2959 GCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAGAAGGGGCTC 3018 Query 365149 AAGACAGG 365156 ||||| || Sbjct 3019 AAGACGGG 3026 >seq67 Length=90363 Score = 120 bits (132), Expect = 8e-22 Identities = 398/602 (66%), Gaps = 24/602 (4%) Strand=Plus/Plus Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAA-A 111418 || ||| | |||||||| ||| | || ||| | ||| || || |||||| || | Sbjct 88110 GAGGAATTACTGTGGTTCATTAGTGGGGATACGAGTGCGCATACGCT-GCAGCAGAAGGA 88168 Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGT--TGGTCTT--G 111474 | | || |||||||| |||||||| || || | | | || |||| ||| || | Sbjct 88169 CATTCATATCTGGGATGGCAATGGATCGCGAGAGTATTTGGA--CAGTCGTGGACTGCAG 88226 Query 111475 TCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTG 111534 |||| |||| ||| || || |||||||| || ||||| || ||||| |||||||| | Sbjct 88227 TCGAGG--GAAGTAGGAGACCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAG 88284 Query 111535 CAGACTACAA----AACCATGCACGACTCATATGATTCACAGGGAACTGATCAA-TTACA 111589 | | |||| | |||||| |||| || |||||| |||||| || | Sbjct 88285 CCAAGTACACGGATATGCATGCA-GACTACACTGG---ACAGGGGGTGGATCAACTTGCT 88340 Query 111590 GAATGTCATTGATCAAATTAAGAACAA-CCCAACTTCTCGTCGCATTATTATGAGTGCAT 111648 || || || | |||| || | |||| ||| || ||||| ||| | || ||| | Sbjct 88341 GAG-GTGATCCA-CAAACTACGCACAAACCCGACCGACCGTCGGATTGTGTTGTCTGCGT 88398 Query 111649 GGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTT 111708 |||| ||| | | | | ||||| || ||||||||||| | | || ||||||| Sbjct 88399 GGAATCCAGCGGATCTCAATGAGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTTT 88458 Query 111709 ATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTG 111768 | || || || | | || || || ||||| ||||| || ||||| || || || | Sbjct 88459 ACGTGGCGGATGGCGAGTTATCGTGTCAGATGTACCAGCGTTCGGCTGACATGGGCCTCG 88518 Query 111769 GTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAA 111828 | || ||||| || || || ||||| || ||||| || | | | || || | | Sbjct 88519 GCGTGCCGTTCAACATCGCCAGTTATGCGCTACTGACGCGACTTGTGGCCCAAGTGGCTG 88578 Query 111829 ATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACA 111888 | | ||||| || ||||| || ||| |||| || ||||| || || ||| |||||| Sbjct 88579 GTTTGAAACCTGGCGAATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCACG 88638 Query 111889 TTGATGCACTTAAAACACAGTTGAAGCGCAAACC-ATACGATTTCCCAACGATTCATATC 111947 | || | ||| ||| |||| | | ||||| || || | ||||| ||| | || ||| Sbjct 88639 TAGAGCCGCTTCAAAAACAGCTAACGCGCACCCCGCGACCA-TTCCCCACGTTGCACATC 88697 Query 111948 AA 111949 || Sbjct 88698 AA 88699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303319032618740