Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 221 2e-52 seq165 183 6e-41 seq846 102 2e-16 seq513 84.2 4e-11 >seq7 Length=236454 Score = 221 bits (244), Expect = 2e-52 Identities = 576/862 (67%), Gaps = 31/862 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| |||| |||||||| |||||||| | ||||| |||| || ||||| || Sbjct 187428 TCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATCCAGTCAAACGGGTTCTTG 187487 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||| ||||| | ||| | | |||||||||||| ||||| | Sbjct 187488 ACGTTGTAGATCTTGGACACACCAAGCGAATAC-AGCAGGCGGTCTGCCACGAACTCAAT 187546 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGA---ATTGCCTCAC 251737 ||||| | ||| || | ||||||||||| |||| | || ||| | | ||||| Sbjct 187547 GTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACTGGGAGCGAGTCGCTCAC 187606 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC---CTGTGCCA 251794 | || || | |||| | || || || | ||| | | ||| ||| || Sbjct 187607 A----AACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGCACACGCTGCTCCG 187662 Query 251795 GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCT 251854 | ||||||| || ||||||| ||||||| || |||| | | ||||| ||| | Sbjct 187663 G---CAGCTTGGTCACCAGCTTCGAGTACAACAGACAAGCAAAGTCTGTGTGCATACCTT 187719 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 | || ||||| |||| ||||||||| | | ||| |||||||| | ||||| ||| ||| Sbjct 187720 CATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTTCTTGA 187779 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | ||||||||| || ||||| | | ||||| ||| | |||| | Sbjct 187780 GCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCAAATGCCA 187839 Query 251975 CAAGGCGCTCAGCAAACG-----ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGC 252029 ||| ||||| | | | |||| || | || | ||| | ||||| || Sbjct 187840 GAAGACGCTCCGGGTATGAGGACACTT-TCGGGTCGCACCATCTT-AGCGCCCAACTCGC 187897 Query 252030 CTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATC 252089 |||||| || ||||| || || |||||| | || || | ||| || | Sbjct 187898 CTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCTTCTCCACAGC 187957 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 ||||| |||| || |||| || || ||||||| ||| || |||||| || || Sbjct 187958 GTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGTTCTCAATGGC 188017 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209 || ||| | | ||||| ||| || ||| | ||||| || |||||| | Sbjct 188018 AATTTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACCTGTACTTCATTGCTAAAGTTCAT 188077 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCAAGAATGGTCTTGA 252268 || | |||||| |||| |||||||| ||| | |||||||| |||||| | | ||||| Sbjct 188078 AGCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAG-ACGTGCTTGA 188136 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||||||||| | ||| |||| || | |||||| | ||| || || Sbjct 188137 TGAAGTGACGCTCGTTGTCTGTGAG---GTTTCCCCAGTCCTTGAGGTCGTGTACCAAGT 188193 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCA 252387 | |||||| | |||||||| ||| | |||||||||||||||| ||| |||| || Sbjct 188194 CCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGC-CACACGTCG 188252 Query 252388 GGGTACTTGATTGGGAA-AGCA 252408 | | || ||| ||||| |||| Sbjct 188253 TGCTCCTGGATGGGGAATAGCA 188274 >seq165 Length=52791 Score = 183 bits (202), Expect = 6e-41 Identities = 662/1020 (65%), Gaps = 33/1020 (3%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 ||| || || ||||||| ||||||||||| || ||||| | ||||||||| ||| | Sbjct 15426 GGACCTTTGCAACTGTGAGTTCTCGCTCGCTTACGGTGGTATGATTCTGCTGAACAACGC 15367 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| || | | ||||||||| |||| || ||||| ||||||||| || ||||| Sbjct 15366 CCGTCTTCGCCTAAAGCGTGGCCACCGTTACGGTCTGTGCGGTCCCAACGGTTGCGGTAA 15307 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC-TAACGCATCTG 279528 | || || |||||||||||| | ||||| ||||| || || || || | ||| | | Sbjct 15306 GTCTACGCTTATGCGCGCCATTTCCAACGGCCAGCTTGACGGCTTCCCGTCGCGCGAC-G 15248 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGT 279588 || | | ||| |||| || |||||| || | | | || | || | || Sbjct 15247 AGCTGAAGACTGTGTTCGTCGAGCACAACTTGCAAGCTTCGGAGGCCGAGCTGTCCGTTG 15188 Query 279589 TCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCC 279648 | |||||| | || || | | | | ||| | | ||| || |||| || | Sbjct 15187 TGGACTTCATCCTGTTCGATGAGGACCTGAAGGACA-CTCCTCGCC--AGGAGGTCGTTG 15131 Query 279649 AGAAACTGGAGGCCAATGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTG 279707 | | || | | ||| || | || |||| | | | || || | || Sbjct 15130 ACACGCTTACCGGCG-TGGACTTCACCGCTGAGATGCAAGCCCAGGCTGTGGGCACCCTT 15072 Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 |||||||||||||||||||| |||| || | || || || || | | ||||| | Sbjct 15071 TCGGGTGGTTGGAAGATGAAACTGGAGCTGGCCCGTGCTATGCTTCAGAAGGCCGACATT 15012 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 || || ||||||||||| || |||||| |||| || ||||| || ||||| | | | Sbjct 15011 CTGCTTCTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTTGCGTGGCTCGAGAAC 14952 Query 279828 TACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTA 279887 ||||| || | ||| ||| || | | |||| || || |||||||| ||||||| Sbjct 14951 TACCTGACGAACCTGCCGAACGTGACGAGCATCATGGTGTCCCACGACTCCAGCTTCCTT 14892 Query 279888 GATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCAC 279944 || | || || || |||||||||||| ||| | || |||||| ||| |||| Sbjct 14891 GACACGGTCTGTACTAACATCATTCACTACGAGACCCGTAAGCTGAAGATCTACAAG--- 14835 Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTG 280004 |||||||| || ||||||| | |||||||| ||||||||||| ||| Sbjct 14834 ---GGCAACCTTTCCAAGTTCGTGGAGGTGAAGCCTGAGGCCAAGGCCTACTATGAGCTG 14778 Query 280005 AAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATC 280063 ||| || ||| || | ||||| ||||| || || || | | |||| | | | Sbjct 14777 GAGGCTGCTACCTTCAGATTCACGTTCCCGGAGCCTGGTTTCCTTGCTGACATCAAGAAC 14718 Query 280064 AAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATC---CCAATGGCCC 280120 || || || | |||| | ||| | || | | || | | ||||| Sbjct 14717 AAGGGTAAGC-CCATCA------TTCGTCTGACCAACTGTACCTACCAGTACCCTGGCCG 14665 Query 280121 CAAC--ATCTTC-AGCAGTGTCAACTCG--CAGGT-TTCTATGAACTCACGGATTGGTGT 280174 || | | || | || || ||| | || || || || || |||| || Sbjct 14664 TGACAAACCGTCGATCAACAACATTTCGGTGACGTGCGCTCTGTCATCGCGTATTGCCGT 14605 Query 280175 CATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCA 280234 |||| ||||| ||||| |||||||| || || ||||| | ||||| || ||| | Sbjct 14604 GCTTGGCCCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTTGA 14545 Query 280235 GGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 |||| | || | || |||||||| || |||||| | ||||||||||||||||| Sbjct 14544 ACCCACCGTCGGTACGGTATGGAAGCACCCTTCCATGCGTTTCGCTTACGTCGCTCAGCA 14485 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||||||||| ||||| || | ||||| ||| |||| | ||| |||||||||||||| Sbjct 14484 CGCTTTCCATCACATTGAAGAGCACCTCGACGAGACTGCCAACGCCTACATTCAGTGGCG 14425 >seq846 Length=6143 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 4040 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 4099 Query 142563 CCCCAC 142568 |||||| Sbjct 4100 CCCCAC 4105 >seq513 Length=20403 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 1313 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1254 Query 142565 CCAC 142568 |||| Sbjct 1253 CCAC 1250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027809539840870