Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7 194 3e-44 seq165 152 9e-32 seq28 122 2e-22 seq152 114 2e-20 seq846 95.1 2e-14 >seq7 Length=236454 Score = 194 bits (214), Expect = 3e-44 Identities = 615/935 (66%), Gaps = 25/935 (3%) Strand=Plus/Plus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATTCATG---ACGCCCGCCTT 9949 ||| ||||| ||||||| || || || | || ||||| | ||||| ||||| Sbjct 187346 TTAAAAGTCGGCGTCAAGTGTGAATACCTGCTCCTCGGCCGCAACACCCACGCCTGCCTT 187405 Query 9950 CTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTC 10009 |||||| || || |||||||||||| | |||||||| || || || | || Sbjct 187406 GGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTC 187465 Query 10010 CATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAAT 10069 ||| ||||||| ||||||| | || | ||||| ||| || | | | Sbjct 187466 CATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAG 187525 Query 10070 GCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCG 10129 |||||| ||||||||||| |||||||||| ||| || ||||||||||||| |||| || Sbjct 187526 GCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCA-GCT 187584 Query 10130 GCAG-GGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGC 10188 || |||| | ||||| | || || | |||| | || || || || || | Sbjct 187585 CCACTGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT-C 187643 Query 10189 TCTTTACCACG-TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAAC 10247 || | |||| | | ||||||| || | |||||||| |||| || |||| Sbjct 187644 TCGTGCACACGCTGCTCCGGCAGCTTGGTCACCAGCTTCGAGTACAACAGACAAGCAAAG 187703 Query 10248 TGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCAT 10306 | ||| ||| | || || || || || |||| ||||||||| || | |||||| ||||| Sbjct 187704 T-CTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCAT 187762 Query 10307 GAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCC 10364 ||| || || || |||||||| |||| ||| || || || ||||| ||||| ||| Sbjct 187763 GAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAA--GAAGATTCCC 187820 Query 10365 TCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG----CGGTCGCG-CGAAAAGT 10419 ||||| | | || | || ||||| | | | ||| | ||| | || | | Sbjct 187821 TCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTTTCGGGTCGCACCAT 187880 Query 10420 ATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAG- 10478 || | | || || | |||||||| ||| ||||| ||||| || || || || Sbjct 187881 CTTA-GCGCCCAACTC-GCCTTCTTGGTCACACACGGGATGGTCTCAATTGCA-CGCAGC 187937 Query 10479 AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCG 10538 || | || ||| |||||| || | |||| |||||| ||||| ||| Sbjct 187938 AGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCT 187997 Query 10539 CTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCGTG 10598 ||||| | ||||| || ||| | ||||||| ||| ||| || || Sbjct 187998 GAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACCTGT 188057 Query 10599 ACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAG 10658 ||||| | | |||||| | ||||||||| |||| |||||||| ||| | |||||| Sbjct 188058 ACTTCATTGCTAAAGTTCATAGCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAG 188117 Query 10659 AAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCT 10718 ||| | | || ||||||||||||||| ||||| | || | || ||| | |||||| Sbjct 188118 AAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTT---CCCCAGTCC 188174 Query 10719 ACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTG 10778 | || || | | | ||| ||| | |||||||| |||| | ||||||||| Sbjct 188175 TTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTG 188234 Query 10779 TACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 |||||||| | | |||| | | | |||||||||| Sbjct 188235 TACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 188269 >seq165 Length=52791 Score = 152 bits (168), Expect = 9e-32 Identities = 437/664 (66%), Gaps = 16/664 (2%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| ||||| ||||| ||| ||| ||||| | ||||| || |||||||| Sbjct 14425 CGCCACTGAATGTAGGCGTTGGCAGTCTCGTCGAGGTGCTCTTCAATGTGATGGAAAGCG 14484 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| || |||||||| || | || || ||| Sbjct 14485 TGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTGCTTCCATACCGTACCGACGGTGGGT 14544 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | |||||| ||||| | ||| || ||||| |||||||||| | Sbjct 14545 TCAACCTCACCCGTCAGCATCTTGATCAGCGTCGACTTACCGGCACCGTTGGGGCCAAGC 14604 Query 225161 ACGCCAATCCGGGATGACATTGCA-ACCTG--CGAGTTCACGTTGCT-GAAGATCT--CA 225214 ||| |||| || ||||||| || || | ||| | |||| | || | | | || Sbjct 14605 ACGGCAATACGCGATGACAGAGCGCACGTCACCGAAATGTTGTTGATCGACGGTTTGTCA 14664 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTGGAA 225274 |||||| |||| ||| | ||| ||||||| ||||| Sbjct 14665 CGGCCAG---GGTACTGGTAGGTACAGTTGGTCAGACGAATGATGGGCTTACCCTTGTTC 14721 Query 225275 GTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAGG 225334 | || | | ||||| || ||||| |||||| | || || ||| ||| Sbjct 14722 TTGATGTCAGCAAGGAAACCAGGCTCCGGGAACGTGAATCTGAAGGTAGCAGCCTCCAGC 14781 Query 225335 TCGTAGTAAGATGCAGCCTCGGG--TCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGT 225392 || ||||| | ||||| || || | | ||||||| || ||||| || || Sbjct 14782 TCATAGTAGGCCTTGGCCTCAGGCTTCACCT--CCACGAACTTGGAAAGGTTGCCCTTGT 14839 Query 225393 GCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGA 225452 || | ||||| || ||| |||| |||| || | || || | |||||||| Sbjct 14840 AGATCTTCAGCTTACGGGTCT---CGTAGTGAATGATGTTAGTACAGACCGTGTCAAGGA 14896 Query 225453 AGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGA 225512 ||| |||||||||||||| |||||| || |||||||| |||| | | |||| | Sbjct 14897 AGCTGGAGTCGTGGGACACCATGATGCTCGTCACGTTCGGCAGGTTCGTCAGGTAGTTCT 14956 Query 225513 TGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGT 225572 |||||| || ||||| |||| |||| |||||| || || || || |||||||| |||| Sbjct 14957 CGAGCCACGCAACGTTCTTGACATCCAAGTGGTTCGTCGGCTCATCAAGAAGCAGAATGT 15016 Query 225573 CAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGG 225632 | || | || || || || | || ||| ||||| ||||| || || || |||| Sbjct 15017 CGGCCTTCTGAAGCATAGCACGGGCCAGCTCCAGTTTCATCTTCCAACCACCCGAAAGGG 15076 Query 225633 AGCC 225636 ||| Sbjct 15077 TGCC 15080 Score = 113 bits (124), Expect = 8e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||||| ||| | || ||||| ||| ||| || | || | | ||| || ||||| Sbjct 13881 GTGAGTAATCATAACGACACCACCGTTGAACTCCTTGATAGCCGTAGCAAGGGCACCAAG 13940 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 || |||||||||||| ||||||| |||||||| || | | | ||| ||| | |||| Sbjct 13941 AGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATCAAGCACCAGGATGTGCGGGTTCAGCCA 14000 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || ||| ||||| | ||| | ||||||||||||||| || || || || || || ||||| Sbjct 14001 CATGGCAGCACCCAGCACGACCTTCACCTTCTGACCACCGGACAGACCACGCATGCGCGA 14060 Query 224629 GTGAGTCGTGAATTCGG 224645 ||| || ||| |||| Sbjct 14061 GTGCGTACCGAACTCGG 14077 >seq28 Length=140343 Score = 122 bits (134), Expect = 2e-22 Identities = 276/406 (68%), Gaps = 12/406 (3%) Strand=Plus/Minus Query 268394 CCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCATATGC 268452 ||||| | || |||||||||||||| ||||| ||||| ||| |||||||| || || || Sbjct 7208 CCACGCCGTGGACTCTCGTGGTTGAACAGGATTCCGTT-CACAGCGAACATTCCGTAAGC 7150 Query 268453 CTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACG 268512 || |||| || || || |||| | ||||| ||| |||| | | ||||| || || Sbjct 7149 TTCGCGGTGATTTACCACACTCCAAAAGGCAAATTGCTTCGCAATTCCATACGGCGAGCG 7090 Query 268513 TGGATGGAAGGGCG--TCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCG 268570 ||| ||||| || | || | ||| || || | |||| || || || | | || Sbjct 7089 TGGGTGGAATGGTGTATCTTCATC--CTGCGGCGTGGCTCGTACCTTCCCGTACAATTCA 7032 Query 268571 GAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCG 268630 || || || ||||||||| | || || ||| || ||||| | || | | |||| Sbjct 7031 CTTGTGGAGGCCTGGTAGAACCTAGTGGTACGTTCAAGTCCGCAAGTGCG--TAGACTCG 6974 Query 268631 --AGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATG 268688 |||| || | |||| | ||||| || || || ||||| | || || || | Sbjct 6973 TAAGCAGCCGCAACACACCCAAAGCGTCCACATCGGCCGTGTACTCGGCCAGTTCAAAAG 6914 Query 268689 ACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGCA 268748 |||| | |||||| | || |||||||| || |||||||||||| || | | || Sbjct 6913 ACACTTTCACATGGGACATTGCACCCAGGTTGTACACCTCATCCGGTCGCACTTTCGCCA 6854 Query 268749 CGATCT-TCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 | |||| ||| | || | | |||||||||||||| ||||||| Sbjct 6853 CAATCTGGCAC-ATATTGGACGCATCGGTGAGGTCTCCATAGTGCA 6809 >seq152 Length=55579 Score = 114 bits (126), Expect = 2e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 224501 GCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGG 224560 ||||| |||| ||||||| ||| | ||||||||||||||||| | | | ||| ||| Sbjct 34335 GCGCCCAGCGCAGCGCGGTCCAGGTAATTCGTCGGCTCATCCAGCACCAGCAAGTGCGGG 34394 Query 224561 CACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGG 224620 || | ||||| ||| ||| ||| ||| ||||||||||||||||| || ||||| |||||| Sbjct 34395 CAGTTCCACATGGCAGCAGCAATCACAAGCTTCACCTTCTGACCACCCGAGAGACCGCGG 34454 Query 224621 ATC 224623 ||| Sbjct 34455 ATC 34457 >seq846 Length=6143 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 4041 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 4100 Query 84516 CCCAC 84520 ||||| Sbjct 4101 CCCAC 4105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921598553020400