Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq165 134 3e-26 seq7 111 3e-19 >seq165 Length=52791 Score = 134 bits (148), Expect = 3e-26 Identities = 419/635 (66%), Gaps = 29/635 (5%) Strand=Plus/Plus Query 333725 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 333784 || |||||||| ||| || || |||||||| |||||||||| || | ||||| || Sbjct 14811 CTCCACGAACTTGGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTAGTG 14867 Query 333785 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 333844 || || || || || | ||| ||||| | ||||||||| ||||| || | || || Sbjct 14868 AATGATGTTAGTACAGACCGTGTCAAGGAAGCTGGAGTCGTGGGACACCATGATGCTCGT 14927 Query 333845 AACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAGA 333902 |||| | ||||| ||||||| ||| || |||||| ||||| ||| | Sbjct 14928 CACGTTCGGCAGGTTCGTCAGGTAGTTC--TCGAGCCACGCAACGTTCTTGACATCCAAG 14985 Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962 ||||| |||||||| |||||||| || | | || ||| | ||||| ||||| || || Sbjct 14986 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 15045 Query 333963 GCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTG---GGGCAGATTGGCGCTCA 334019 | |||||||| ||||| || || ||||| ||| | | |||| ||| |||| Sbjct 15046 TCCAGTTTCATCTTCCAACCACCCGAAAGGGTGCCCACAGCCTGGGC---TTGCATCTCA 15102 Query 334020 ATATCAAAGCCAAC--CGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTT 334077 ||| | || || | || || |||| || | |||| | ||| Sbjct 15103 GCGGTGAAGTCCACGCCGGTA--AGCGTGTCAACGACCTCCTGGCGAGG---AGTGT--- 15154 Query 334078 CCTTTACTTGTTCATC--ATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCC 334135 |||| | | ||||| | || |||||||| | | | || | | || || | Sbjct 15155 CCTTCAGGTCCTCATCGAACAGG--ATGAAGTCCACAACGGACAGCTCGGCCTCCGAAGC 15212 Query 334136 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGAGGGGAACCCTTCAA 334194 | | | ||| || ||| | |||| |||| | || ||| || ||||| || |||| Sbjct 15213 TTGCAAGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCGCGC-GACGGGAAGCCGTCAA 15271 Query 334195 GCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACA 334254 |||| ||||| ||| |||||||| || || || ||||| ||||| || || |||| Sbjct 15272 GCTGGCCGTTGGAAATGGCGCGCATAAGCGTAGACTTACCGCAACCGTTGGGACCGCACA 15331 Query 334255 GACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCAC 334314 ||||||| |||| |||||||| || | || | |||||||| ||||| | |||| Sbjct 15332 GACCGTAACGGTGGCCACGCTTTAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCAC 15391 Query 334315 CATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 | || || || || || ||||| | || || ||| Sbjct 15392 CGTAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15426 >seq7 Length=236454 Score = 111 bits (122), Expect = 3e-19 Identities = 257/382 (67%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 || ||| ||||||| ||||| ||| ||| | |||||||| || | | || ||| Sbjct 187798 TTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAAC 187739 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| |||| ||||| || || || | ||| | | || | | || |||| || ||| Sbjct 187738 GAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAG 187679 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || || |||||| || | | || || | | || ||| || || || | | Sbjct 187678 CTGGTGACCAAGCTGCCGGA-GCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGAT 187620 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 |||| | || || | ||||| | | ||| ||| || ||||||||||| | || Sbjct 187619 CGAACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCT 187560 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | |||||||| || ||||| || |||||| | | |||||||| || | Sbjct 187559 CATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTG-TGTCCA 187501 Query 243645 AG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 || | |||||| ||||||||| |||| || ||||| | || || || || || || | Sbjct 187500 AGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGA 187441 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 ||||||||||||| |||||||| Sbjct 187440 CTAACTTCTTCGAGAAGCGTGT 187419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102850749554500