Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq237 156 5e-33 seq7 150 2e-31 seq120 84.2 3e-11 >seq237 Length=40644 Score = 156 bits (172), Expect = 5e-33 Identities = 467/714 (65%), Gaps = 15/714 (2%) Strand=Plus/Minus Query 114550 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 114609 ||| ||||| | ||||| ||||| ||||| ||| || |||||||| | |||| | Sbjct 2091 AATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAA 2032 Query 114610 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTG-GCA 114668 ||| |||||||| | || | | |||||||| ||| | || | || ||| Sbjct 2031 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACA-----GCTGTTGAGCA 1977 Query 114669 CAG--TGGCGTT--GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCT 114724 | || | | ||| || || || ||||||||| | || | || ||||| Sbjct 1976 TTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCC 1917 Query 114725 TCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA 114784 || ||| | ||| | || || || |||| | || ||||| | | ||| | ||| Sbjct 1916 TCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCA 1857 Query 114785 CCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGA 114844 |||| |||||||||||||| || || || | ||| ||||| |||| | || || Sbjct 1856 TTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGT 1797 Query 114845 -CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 114903 || | || || | | || || || |||| ||||| || || | | ||| || Sbjct 1796 GCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGC 1738 Query 114904 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTAC 114960 ||||||||||||||| || | ||| | ||| ||||| || || ||| |||||| || Sbjct 1737 GTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCAC 1678 Query 114961 ATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 115020 || | || || | ||||| || || ||||| || ||||| || | || ||| || Sbjct 1677 GTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTT 1618 Query 115021 TGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCC 115080 || || || || ||| | |||| || | || || || ||||| || || Sbjct 1617 CGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCC 1558 Query 115081 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTC 115140 ||||||||| ||||| ||| |||| | ||| || | || || || || || ||||| Sbjct 1557 TGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTC 1498 Query 115141 ACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 115200 | ||| | || | | |||||| |||| |||||| | ||| |||||||| ||||| Sbjct 1497 ATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAA 1438 Query 115201 GAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 115254 || || || || |||||| |||| | ||| ||||| ||||| ||||| Sbjct 1437 CAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 1384 >seq7 Length=236454 Score = 150 bits (166), Expect = 2e-31 Identities = 352/527 (67%), Gaps = 12/527 (2%) Strand=Plus/Plus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||||||||| ||||| || | | ||| | Sbjct 187403 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCAT 187462 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | ||||| |||||||| ||| | || | | ||| |||| | | || Sbjct 187463 GTCCATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAG 187522 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 || || || | ||| |||||||||||| |||| | | |||||||| ||||| || Sbjct 187523 CAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 187582 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | |||||||| ||| | ||| | | || || | ||| || || || | || Sbjct 187583 CTCCACTGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT 187642 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG---- 126047 |||| | | | || || ||| || ||| |||| | || | Sbjct 187643 CTCGTGCACACGCTGCTCC---GGCAGCTTGGTCACCAGCTTC--GAGTACAACAGACAA 187697 Query 126048 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 |||| ||| ||| | ||| || ||||| ||||| || || ||||||| ||| || Sbjct 187698 GCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCA 187757 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| |||||||| | |||||| || | ||||| || ||||||||||||||| Sbjct 187758 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATT 187817 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTT-GTGTCAAA 126225 ||||||||| || || || | |||||||| | | ||| | ||||| | ||| | Sbjct 187818 CCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCA 187876 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 126272 ||| | | |||||| |||||| || | |||||||| ||||| Sbjct 187877 CCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCT 187923 >seq120 Length=126101 Score = 84.2 bits (92), Expect = 3e-11 Identities = 261/394 (66%), Gaps = 24/394 (6%) Strand=Plus/Minus Query 172580 AGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAACCA 172639 || || || |||||||||| |||||| | ||| | | ||||||||||| || ||| Sbjct 25128 AGTAGTGACGGCCAGAAGTGGTGGATGAGATTGATCACCAGACCCTTAATATGACTGCCA 25069 Query 172640 TCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGC---TCGGAAACATC 172695 |||| ||| ||| | ||| ||||| || | ||||| || |||| ||| || Sbjct 25068 TCGTGATCTTGATCTGCCATGATCATCAGGTGGCCATACCGCAAGCCTTTCGTGGAC--- 25012 Query 172696 TTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATT--GAA-CTCTTG 172752 | |||| | || | | || || |||| |||||| | || ||| ||||| Sbjct 25011 -TCATACATTTGGCCATACTTGAGTCC-AAGAA--TCTTGACCACGTTTTGAATCTCTTC 24956 Query 172753 GTTTGATGTGAGTTGCGCCACTGAA--GCATCGCGGACATTTTTACACTTCCCACGGAGA 172810 |||| || ||| | | || || || || |||||| ||| ||||| || Sbjct 24955 GTTTTTCAGGATTTGGG--AGTGGCTTGCCTCACGCACATTTAGCATCTTACCACGCAGC 24898 Query 172811 GGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTC 172870 || || |||||||||| || | ||||| || | ||||||| | || || | || || Sbjct 24897 GGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCACAGCTACTGTTTTA 24838 Query 172871 GCGGAATCACCCTCCGTCACGATGAGCGTACA---CTTTCCAGATTGTGCCGTCCCCGCC 172927 || ||||||||||| || | ||| || || || ||| || | || || || || Sbjct 24837 GCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTTCGCAGTGCCGGCG 24781 Query 172928 TTGTTCGCATCGTCCAACTTGGGAATACCAGTAA 172961 | ||| |||||||| | ||| |||||||| |||| Sbjct 24780 TGGTTGGCATCGTCTAGCTTTGGAATACCCGTAA 24747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597338143475600