Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq237 307 1e-78 >seq237 Length=40644 Score = 307 bits (340), Expect = 1e-78 Identities = 1085/1689 (64%), Gaps = 39/1689 (2%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || |||||||| || || ||||| ||||| |||||||||| ||| || Sbjct 1423 GCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCGTGCTTCTTG 1482 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||| || || |||| |||| || || | |||||| | Sbjct 1483 TTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGTGCGTGC 1542 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || |||||| | ||| || | || || | | Sbjct 1543 ATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACTAACAGC 1602 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || ||| | ||||||||| || |||| ||||| || || || ||| Sbjct 1603 TACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGTGTTTAAC 1662 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | |||| || ||||||||||||||||| || | | ||||| || || ||| | ||| Sbjct 1663 GATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGCGATTTAT 1722 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || || || |||||||| || ||| | ||| | || ||||| |||||||| || ||| Sbjct 1723 CTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAACCATGGTAAC 1782 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||| | ||||| ||||| |||||||| || || || ||||| Sbjct 1783 GAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTATTCATGAAG 1842 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || ||| || | |||||| | || |||||||| || |||||| |||| | Sbjct 1843 CGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTGTAC 1902 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGAC-TTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || || ||| | | || |||| ||| || ||||| | ||| || Sbjct 1903 GAGTGCTGGGGAGAG-GAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCGC 1961 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | ||| || ||||| |||||||| || |||||| ||| | ||||| Sbjct 1962 CCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAGAC 2021 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 ||| ||| | ||| || | ||||||| | | |||| |||||| || |||||| |||| Sbjct 2022 GGGCGTGCCTTTCATGTTATACAAGGACGCCGCCAACCGCAAGTCTAATCAGCAGAACCT 2081 Query 94551 CGGGGTGAT---CAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| ||| | |||| || ||||| || | | |||||||| || || || Sbjct 2082 CGGCACGATTCGCTCGAGC---AACTTGTGCTGTGAAGTGATGGAGTATACGTCGCCTGA 2138 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 ||| | || ||||| ||| ||| ||| | || ||| ||||| |||| | Sbjct 2139 TGAGGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGT-TGAGAACGC-- 2195 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGTC- 94725 ||| | | || | || |||| | ||| | || |||| || || Sbjct 2196 --CGTATTCAACTAC----------AAGAAGCTGTATGA---TGTCGTCAAGG-TGATCA 2239 Query 94726 --TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 |||||||||| ||| |||||| |||| ||||||||| ||||| || | Sbjct 2240 CACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAATT 2299 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || | || || || || ||||| | |||||||| | | Sbjct 2300 CCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATCC 2359 Query 94844 TGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAA 94903 | ||| | | | ||| | || ||| | | || ||| || ||||| | Sbjct 2360 TCATGGACTTTGCGTTCGAGAGTCCGGAGGCGCGTGAGCTCAACAAGAATATCTTCGAGA 2419 Query 94904 GCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC 94963 ||| || |||| | ||| | || | | |||||| |||| || || Sbjct 2420 CCATCTACTACGCTTCTATGGAGACGTCAATGGAACTGGCCA---CGGAATTGGGCCCGT 2476 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGGT 95022 |||| | |||| || ||| ||| | | |||| || || |||||||| | ||| Sbjct 2477 ACGAGACTTTCCAGGGTTCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGAAC 2535 Query 95023 GTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACAC 95079 || | || |||| ||||||| ||||||| || || | | || |||| || Sbjct 2536 GTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAAC 2595 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 || || || |||| || || || || ||||| ||||| || ||||| |||||||| Sbjct 2596 GGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTC 2655 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199 || || |||||||| ||||||| |||||||| ||| |||||||| | || ||||| || Sbjct 2656 GGTAATAACGAGTCTATCGAACCGTTCACCTCTAACATGTACAACCGCCGCGTGCTTGCG 2715 Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG 95259 || || || || || | |||||| |||| | || |||| |||||||||||| Sbjct 2716 GGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGG 2775 Query 95260 GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAA 95319 | | |||| ||||| | | | | ||| || || ||||| | Sbjct 2776 GCTCCTGAGGTGCGTAACCAGATCTTGAATGACGGCGGTTCGGTGCAGAATGTGAGCTCC 2835 Query 95320 ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATA 95379 || ||||| ||||||||| | |||||||| |||||||||||| |||| ||| Sbjct 2836 ATTCCGGACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGTCGATT 2895 Query 95380 CTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNN 95439 || |||| | || | || || ||| |||||| ||||| Sbjct 2896 CTGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAACATTCAC 2955 Query 95440 ATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGT 95499 || ||||| || | | || | || || ||| || |||| ||||| ||||| Sbjct 2956 ATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAGAAGGGG 3015 Query 95500 CTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTCGCC 95559 |||||||| || ||||| || |||| | || || || ||| |||| |||||| || Sbjct 3016 CTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCTGACGCCATCCAGTTCACC 3075 Query 95560 CTAGAAAAG 95568 | || ||| Sbjct 3076 GTGGACAAG 3084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494710399037200