Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1125 152 6e-32 seq212 105 8e-18 >seq1125 Length=3167 Score = 152 bits (168), Expect = 6e-32 Identities = 150/191 (79%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 852 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 793 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | ||| | | |||||||||| ||| |||| ||||| | | | Sbjct 792 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 734 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | |||| || ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 733 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 674 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 673 AAGATCTGCAT 663 >seq212 Length=44092 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| || | || |||||||| ||||| |||||||| || |||||||| | Sbjct 8127 ACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 8186 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||| || ||||||||||| ||||| |||| ||||||||||| | ||| Sbjct 8187 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 8234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565223774456400