Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq87 102 3e-16 >seq87 Length=74932 Score = 102 bits (112), Expect = 3e-16 Identities = 376/585 (64%), Gaps = 8/585 (1%) Strand=Plus/Minus Query 451904 GTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTT 451963 ||||| ||||| || || || || || || || | || | || || | || |||| Sbjct 5161 GTGCTGGTAGGCGGGTCCACGCGTATCCCCAAGGTGCAGCAATTGCTGACGGATTTTTTT 5102 Query 451964 GGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCA 452023 || ||| |||| | ||| | | || || || |||||||| || | |||||| || Sbjct 5101 CACGGGAAAGAACTGTTCAAGTCCATCAACCCGGACGAAGCTGTGGCGTTCGGTGCTACA 5042 Query 452024 GTTCAAGCAGCTATTCTAACAGGTTCAGATGAT-----GAAAAATTAGGAG-ATATTCTG 452077 ||||| || || ||||||| || | | ||| | || | | || || | ||| Sbjct 5041 GTTCAGGCGGCCATTCTAAGTGGGGCTGGTGACACCTCGTCCAAGTTGCAGGATCTGCTG 4982 Query 452078 TTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAAT 452137 || | || || | || ||||| || ||| | || || || |||||| | ||||| | Sbjct 4981 CTACTGGACGTGGCGCCACTATCGCTCGGACTGGAGACTGCAGGTGGAGTCATGACGACA 4922 Query 452138 TTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGT 452197 | || || || | |||||| ||||||| || || || || Sbjct 4921 CTGATCGCGCGTAACACCACAGTTCCTTCTAAAAAGTCGCAGACGTTCTCGACGTACTCG 4862 Query 452198 GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGAT 452257 |||||||| || ||||| ||||| ||||| ||||| ||||| | ||||| || || Sbjct 4861 GATAACCAGCCTGGTGTGTTGATTCAGGTGTTCGAAGGTGAACGGACGATGACTCGTGAC 4802 Query 452258 AATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCT 452317 ||| | ||| || | || | | | ||||| || |||| | || | || Sbjct 4801 AATCACCTACTGGGCAAGTTCAATTTGGACGGTATTCCGCCAATGCGCCGTGGTATACCG 4742 Query 452318 CAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAA 452377 ||||| || | |||| ||| | ||||| ||||||||||| |||||| || || || Sbjct 4741 CAAATCGATGTGACCTTCGATATCGATGCGAATGGTATTCTCAATGTGTCAGCCGTCGAG 4682 Query 452378 AAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAA 452436 ||||| |||| || |||| || || || || || || || || ||| |||| | Sbjct 4681 AAATCGACTGG-CAAGGAGAACAAGATCACCATCACGAACGACAAGGGTCGTCTATCGCA 4623 Query 452437 AGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGA 452481 || || ||||| ||||||| || || || || |||||||| Sbjct 4622 GGACGAGATTGACCGCATGGTAGCAGAGGCTGATAAGTTCAAGGA 4578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975666000243560