Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq87 102 6e-16 seq104 87.8 1e-11 seq113 86.0 5e-11 >seq87 Length=74932 Score = 102 bits (112), Expect = 6e-16 Identities = 198/292 (68%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 ||||||||||| || || ||||| || |||| | |||| |||| || || | ||| Sbjct 5451 ACAAGACGATTGTCGAAGTCTTCGCCACCCAGATGCGTATCACCTGCAGTGGCCTTCACT 5510 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | ||| || |||| | || |||| || ||| ||| || || |||| || Sbjct 5511 TCGAAGATTCCTTCCTCAATACTCAGCAGAGAGACGTCAAAGGTGCCGCCGCCCAGGTCG 5570 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 ||||| || ||||| || | | || || || ||||| || || | |||||| Sbjct 5571 AAAATGAGCACATTGTGCTCCC---CACGCTTCTTGTCCAGACCGTATGCGATGGCAGCA 5627 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || ||||||||||| ||||| | || || || | ||||| || || ||||| || Sbjct 5628 GCCGTTGGTTCATTGATAATGCGCAGCACGTTCAATCCAGCGATGGCGCCGGCATCCTTC 5687 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || | || || ||||| ||||| || || || || | || |||| Sbjct 5688 GTCGCCTGGCGCTGCGAGTCGTTGAAATACGCCGGGACGGTCACGACCGCAT 5739 >seq104 Length=70093 Score = 87.8 bits (96), Expect = 1e-11 Identities = 201/303 (66%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || ||||| ||||| | || | || ||||| || | ||| | || Sbjct 62050 TCAAAGTCCTCACCGCCCAAGTGCGTGTCACCGTTGGTAGCAAGCACCTCGAACACACCG 61991 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 | |||| || || ||| || ||||| ||| || ||||| | ||||| | || ||| Sbjct 61990 CCGTCAATAGCCAGAAGCGTCACATCGAAGGTACCGCCACCAAGGTCAAAGACCAGCACA 61931 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||| | || | | || || |||| ||| || |||| ||||||||||| || || Sbjct 61930 TTCTTCTCGCCCTGTGCCTTCTTGTCAATACCGTAAGCAATGGCAGCAGCAGTAGGCTCG 61871 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 ||||| || | | ||| | ||||| ||||| | || ||||| || || || || | Sbjct 61870 TTAATGATACGCTGCACAGTCAGACCGGCAATGGTACCGGCATCCTTGGTAGCCTGACGC 61811 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || | ||||| || || ||||| || |||| || || ||| ||||| ||||| Sbjct 61810 TGAGCGTCGTTGAAGTAAGCAGGCACTGTAACCACAGCGTCAAACACTTCACGGCCAATG 61751 Query 518327 TAA 518329 ||| Sbjct 61750 TAA 61748 >seq113 Length=65843 Score = 86.0 bits (94), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 |||||||| ||||||||| | || || | ||||| || ||||||||| | || || ||| Sbjct 4521 GGTAAAGAGGGTCGTATTCGTGGTAACCTAATGGGCAAGCGTGTCGATTTTTCGGCGCGT 4580 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964 || || || || |||| || || |||||| | || ||||||||||||| Sbjct 4581 ACTGTCATCACCGCTGACCCTAACATTGCTATTGATCAAGTTGGTGTTCC 4630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780719679781420