Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq87 98.7 8e-15 >seq87 Length=74932 Score = 98.7 bits (108), Expect = 8e-15 Identities = 188/275 (68%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 552312 CCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAAT 552371 || ||||| || || | || || | || || | ||||| | || |||| | || Sbjct 4966 CCACTATCGCTCGGACTGGAGACTGCAGGTGGAGTCATGACGACACTGATCGCGCGTAAC 4907 Query 552372 ACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCT 552431 || || |||||| |||||| || | || || ||||| || ||||| || ||| | Sbjct 4906 ACCACAGTTCCTTCTAAAAAGTCGCAGACGTTCTCGACGTACTCGGATAACCAGCCTGGT 4847 Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491 || ||||| | || ||||| ||| | | | ||| || ||| | | ||| || Sbjct 4846 GTGTTGATTCAGGTGTTCGAAGGTGAACGGACGATGACTCGTGACAATCACCTACTGGGC 4787 Query 552492 ACTTTTAATTTAGAAGGTATTCCTCC--TGCTCCTCGTGGAGTACCGCAAATTGAAGTTA 552549 | || ||||| || |||||||| || ||| || |||| |||||||||| || || | Sbjct 4786 AAGTTCAATTTGGACGGTATTCCGCCAATGCGCC--GTGGTATACCGCAAATCGATGTGA 4729 Query 552550 CTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 | |||||||||||||| ||||| ||| | |||||| Sbjct 4728 CCTTCGATATCGATGCGAATGGTATTCTCAATGTG 4694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029186529064300