Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7 163 5e-35 seq237 145 1e-29 >seq7 Length=236454 Score = 163 bits (180), Expect = 5e-35 Identities = 492/754 (65%), Gaps = 21/754 (3%) Strand=Plus/Minus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 |||||| || || ||||| |||| ||||| |||||||| ||| |||||| || |||| Sbjct 188151 ACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGA 188092 Query 25634 ACGAGAATCTGTGCGA-GAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTT 25691 ||||||| ||| || | || || | || ||||| ||| | | || |||| || || Sbjct 188091 ACGAGAACCTG-GCTATGAACTTTAGCAATGAAGTACAGGTGCCTG-AGGCTCGTTGCTT 188034 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| ||||| || ||||| || || | ||||| |||||||| | ||| || || Sbjct 188033 CTACGGCTTCCAAATTGCCATTGAGAACATCCACTCAGAGGTGTACTC---GCTGCTCAT 187977 Query 25752 G---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACAT 25808 |||||||| | |||| | |||| || | ||| | |||| || ||| ||| Sbjct 187976 TGACACGTACATCAAGGACGCTGTGGAGAAGGACCACCTGCTGCGTGCAATTGAGACCAT 187917 Query 25809 ACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTA 25867 || | | | | ||||||| | ||||| | | ||| | || | | || | | Sbjct 187916 CCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACC-CGAAAGTGTCCT 187858 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 | | ||||| || | || ||||| ||||||||||| ||||| ||| || || | Sbjct 187857 CATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCT 187798 Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 || ||||||||||||||||| || || |||||| || ||| ||| ||||||| Sbjct 187797 TTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACG 187738 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCC 26047 ||||||| || | || || ||| | |||| ||| ||||| || ||| | ||| || Sbjct 187737 AGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCG---A 187681 Query 26048 ACTTGCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106 | || | || || || | || || || || || ||| || |||||| || Sbjct 187680 AGCTGGT-GACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAG 187622 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 ||||| | |||||| | ||||||||| Sbjct 187621 ATCGAACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCG 187562 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226 |||||| |||| |||||||||| ||||| |||| ||||||| ||| || | || Sbjct 187561 CTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCC 187502 Query 26227 AGACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGA 26284 | |||||| ||| | |||||||| |||| ||||| | || || | | || | Sbjct 187501 AAGATCTACA--ACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCA 187444 Query 26285 AGACCAACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 |||| |||||||| || ||| | || ||||| || Sbjct 187443 AGACTAACTTCTTCGAGAAGCGTGTGGGCGAGTA 187410 >seq237 Length=40644 Score = 145 bits (160), Expect = 1e-29 Identities = 484/751 (64%), Gaps = 53/751 (7%) Strand=Plus/Minus Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGA-----GA 221478 ||||| |||||||||||| ||||| |||||||||| ||| | ||||| ||| || Sbjct 2433 AGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAG-CTCACGCGCCTCCGGACTCTCGA 2375 Query 221479 A-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | | ||| ||| | | |||||| |||| || || ||||| || || ||||| | Sbjct 2374 ACGCAAAGTCCATGAGGA-----TGAAAG-CGTCCGCAAGGCCCTGCACACCAATACCAA 2321 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 || | ||| | | |||||||| | || || ||||| || |||||||||||| Sbjct 2320 CAGGACGGTGACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTCGA 2261 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||||| ||||| | ||||| || || || || || |||||||| || |||| Sbjct 2260 TGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCTTCTTGTAGTTGA 2201 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 | | || ||| || || || | || || ||| |||| Sbjct 2200 ATA---------CGGCGT---------TCTCAACGAACTTGGGGAGCGCCACGGACGCCA 2159 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 ||| |||||||||||||| || ||||||| || | || || | ||||| Sbjct 2158 AGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTCACAGCACAAGTTGC 2099 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 | | || || || |||| | |||||||||||||| ||||| ||||||||||| | Sbjct 2098 TCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATA 2039 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 ||| || || |||| ||||| | ||| || ||||||| | ||| || | | | Sbjct 2038 ACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAG 1979 Query 221898 CGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | | | ||| | | || ||| |||| ||| ||| || ||| Sbjct 1978 CATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAAC---------AGCG 1928 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | || |||| || || | ||||| ||| || ||| | | |||||| | || || Sbjct 1927 TCTCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAAC 1868 Query 222012 TCCAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 |||| |||| ||| | | || | || |||||| || ||||| | |||||| || | Sbjct 1867 TCCA---CTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCAT 1811 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || | || | | || ||| ||| || | ||| || | ||||||||| |||| Sbjct 1810 AGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACT 1751 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 |||| | |||||||||||||| |||||||| Sbjct 1750 CAAACACATCAGCGTGCCACGGTTCCAGATA 1720 Score = 100 bits (110), Expect = 5e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 221050 CAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCAT 221109 ||| | || | |||||| ||| | ||| | |||| ||| |||| | || | || Sbjct 2802 CAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAG 2743 Query 221110 GTGCTTGTTCACCACTTGGAAA-TCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAG 221168 || ||||||||| | | | ||| ||||||| ||||| | | | ||||| |||||| | Sbjct 2742 GTACTTGTTCACGA-TGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGAGG 2684 Query 221169 TGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGG 221228 ||||||||||||| |||||| || || |||||||| ||||| || || ||||| | Sbjct 2683 TGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCG 2624 Query 221229 GTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 | || ||||| || |||||||| ||| Sbjct 2623 GCGCGACCAGGAGCGAATTGCGCAGGCCG 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928820766140800