Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq87 102 6e-16 seq113 96.9 3e-14 >seq87 Length=74932 Score = 102 bits (112), Expect = 6e-16 Identities = 198/292 (68%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 ||||||||||| || || ||||| || |||| | |||| |||| || || | ||| Sbjct 5451 ACAAGACGATTGTCGAAGTCTTCGCCACCCAGATGCGTATCACCTGCAGTGGCCTTCACT 5510 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | ||| || |||| | || |||| || ||| ||| || || |||| || Sbjct 5511 TCGAAGATTCCTTCCTCAATACTCAGCAGAGAGACGTCAAAGGTGCCGCCGCCCAGGTCG 5570 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 ||||| || ||||| || | | || || || ||||| || || | |||||| Sbjct 5571 AAAATGAGCACATTGTGCTCCC---CACGCTTCTTGTCCAGACCGTATGCGATGGCAGCA 5627 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || ||||||||||| ||||| | || || || | ||||| || || ||||| || Sbjct 5628 GCCGTTGGTTCATTGATAATGCGCAGCACGTTCAATCCAGCGATGGCGCCGGCATCCTTC 5687 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || | || || ||||| ||||| || || || || | || |||| Sbjct 5688 GTCGCCTGGCGCTGCGAGTCGTTGAAATACGCCGGGACGGTCACGACCGCAT 5739 >seq113 Length=65843 Score = 96.9 bits (106), Expect = 3e-14 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 ||| | |||||||| ||||||||| | || || | ||||| |||||||||||| | || Sbjct 4515 TTGCGCGGTAAAGAGGGTCGTATTCGTGGTAACCTAATGGGCAAGCGTGTCGATTTTTCG 4574 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCC 432397 || ||||| || || || |||| ||||| |||||| | || ||||||||||||| Sbjct 4575 GCGCGTACTGTCATCACCGCTGACCCTAACATTGCTATTGATCAAGTTGGTGTTCC 4630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740528771747820