Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7 141 1e-28 >seq7 Length=236454 Score = 141 bits (156), Expect = 1e-28 Identities = 353/531 (66%), Gaps = 5/531 (1%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || ||||| | |||||| | ||||| || || | || |||||||| ||||||||||| Sbjct 187716 CCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTTC 187775 Query 39698 TTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAA 39756 |||||||| || |||| ||||||| || || || |||||||| || || || |||||||| Sbjct 187776 TTGAGCCAGAAGATGG-AGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCAAA 187834 Query 39757 TGCAACAAGTCTCTCTCCGTAACTTGTATCATT-ATGTATCCACTTCT--GTGCCCAATC 39813 ||| | ||| | ||| ||| | | || || | | ||| | |||||| Sbjct 187835 TGCCAGAAGACGCTCCGGGTATGAGGACACTTTCGGGTCGCACCATCTTAGCGCCCAACT 187894 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATC 39873 || ||||| | ||||| || || || || || ||| | || | | || || | Sbjct 187895 CGCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCTTCTCCAC 187954 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 | || || | || || || || | ||| |||| ||||| |||||||| ||||| Sbjct 187955 AGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGTTCTCAAT 188014 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCT 39993 || || || || ||||| || || | || |||| | ||||| || | ||| | Sbjct 188015 GGCAATTTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACCTGTACTTCATTGCTAAAGTT 188074 Query 39994 TTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTT 40053 |||| || || ||||| || |||||||| |||||||| || ||||| || || || Sbjct 188075 CATAGCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAGACGTGCTT 188134 Query 40054 AATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATC 40113 || || | || | | ||| | || |||||| |||| || | | | || Sbjct 188135 GATGAAGTGACGCTCGTTGTCTGTGAGGTTTCCCCAGTCCTTGAGGTCGTGTACCAAGTC 188194 Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCA 40164 | ||||| || ||||| || ||||| ||||| |||||||| | ||| Sbjct 188195 CAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGCCA 188245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686891026234800