Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq237 152 6e-32 seq7 114 2e-20 seq168 87.8 2e-12 >seq237 Length=40644 Score = 152 bits (168), Expect = 6e-32 Identities = 454/692 (66%), Gaps = 9/692 (1%) Strand=Plus/Minus Query 111482 TCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 || |||||||| ||| | || ||| | ||||| || |||| || |||||||| | | Sbjct 1925 TCGAACTCCTCTCCC-CAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACT 1867 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| | ||| |||| || ||||||||||| || || || | |||||| | | || Sbjct 1866 CCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAA 1807 Query 111601 GAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 | || | | ||| | || || ||| ||| ||||| || | || | |||||| | Sbjct 1806 CAAGTCACGTGCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAA 1748 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAG 111716 | ||| |||||||| || || ||||| | || | |||||||| || || ||| Sbjct 1747 ACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCAC 1688 Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 | || | || || || || || ||||||| || || ||||| || || || || | | Sbjct 1687 CCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGG 1628 Query 111777 ATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATC 111835 | || || || || || || || | ||| | |||| | | || || || Sbjct 1627 ACGAGCCGTTCGTGCCGCGGATGT-AGCTGTTAGTAGCTCGGATGTTGTGCATACTGATG 1569 Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 ||||| || || |||||||| ||||| |||||||| | ||||| |||| || || Sbjct 1568 CCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCT 1509 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || ||||| |||| |||| | | |||||| |||| || || | ||| ||| Sbjct 1508 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTA 1449 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 ||||||||||| || || || || ||||| |||| | ||| ||||| ||||| Sbjct 1448 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 1389 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | | | | |||| | ||||||||| | || || ||||||| ||| Sbjct 1388 GTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATC 1329 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTT 112135 | ||| || ||||| | |||| | || || ||||| | | |||| || || Sbjct 1328 TGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTC 1269 Query 112136 TTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | ||||| ||| | | ||| |||| || Sbjct 1268 TTAAAGCCAAAATAATCGTATTCAAAGTCTCG 1237 >seq7 Length=236454 Score = 114 bits (126), Expect = 2e-20 Identities = 329/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||| ||||| || | || || | ||||| Sbjct 187410 TACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATC 187469 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 ||||||| || ||||| |||| | || | ||| |||| | || || || Sbjct 187470 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 187529 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 || | ||| |||||||||||| | |||| | | |||||||| ||||| || | | Sbjct 187530 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 187589 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610 ||||| | ||| | ||| | | || |||| || || || | || |||| Sbjct 187590 GGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 187649 Query 122611 ATA----GTTTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 | | | | ||| || | |||| || || || | | | | ||||| | Sbjct 187650 ACACGCTGCTCCGGCAGCTTGGTC----AC-CAGCTTCGAGTACAACAGACAAGCAAAGT 187704 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| | ||| ||||| || ||| || || || ||||||| ||||| ||||||| Sbjct 187705 CTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGA 187764 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 |||| |||||||| | ||| | || | ||| || || || ||||||||||| ||||||| Sbjct 187765 GACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 187824 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATTTC 122844 || ||||| || | ||| || || | | | ||| || ||||| | || ||||| | Sbjct 187825 CAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCTT 187883 Query 122845 ATTGCCCATTTCGCCTTCTT 122864 | ||||| |||||||||| Sbjct 187884 AGCGCCCAACTCGCCTTCTT 187903 >seq168 Length=53825 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 1611 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 1670 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 1671 CCGGTAGGAGCTT 1683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628015749672000