Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq237 152 6e-32 seq7 141 1e-28 >seq237 Length=40644 Score = 152 bits (168), Expect = 6e-32 Identities = 461/709 (65%), Gaps = 5/709 (1%) Strand=Plus/Minus Query 118790 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 118849 ||| ||||| | ||||| ||||| ||||| ||| || |||||||| | |||| | Sbjct 2091 AATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAA 2032 Query 118850 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCAC 118909 ||| |||||||| | || | | |||||||| ||| | | ||| | Sbjct 2031 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGAT 1972 Query 118910 AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 118969 || | ||| || || || ||||||||| | || | || ||||| || || Sbjct 1971 TGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCC 1912 Query 118970 CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTC 119029 | | ||| | || || || |||| | || ||||| | | ||| | ||| | Sbjct 1911 CCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGC 1852 Query 119030 CTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CAGC 119088 ||| || ||||||||||| || || || | ||| || || |||| | || || || Sbjct 1851 CTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACG 1792 Query 119089 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 119148 | || || | | || || || |||| ||||| || || | | ||| ||||||| Sbjct 1791 GTGCAGCT-CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCC 1733 Query 119149 ACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACC 119205 |||||||||| || | ||| | ||| ||||| || || ||| |||||| || || | Sbjct 1732 ACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAAC 1673 Query 119206 TCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCC 119265 || || ||||||| || || ||||| || ||||| || | ||| ||| || || | Sbjct 1672 GTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGC 1613 Query 119266 CCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 119325 | || || ||| | |||| || | ||| || || ||||| || ||||||| Sbjct 1612 CGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCC 1553 Query 119326 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 119385 |||| ||||| ||| |||| | ||| || | || || || || || |||||| ||| Sbjct 1552 ACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCT 1493 Query 119386 TATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445 | || | | |||||| |||| ||| || | || |||||||| ||||| || | Sbjct 1492 GCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCG 1433 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTC 119494 | || || |||||| |||| | ||| ||||| ||||| ||||| Sbjct 1432 TGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 1384 >seq7 Length=236454 Score = 141 bits (156), Expect = 1e-28 Identities = 347/521 (67%), Gaps = 14/521 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 187410 TACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATC 187469 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| ||| | || | ||| |||| | | || || || Sbjct 187470 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 187529 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||||||||||| |||| | | |||||||| ||||| || | | Sbjct 187530 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 187589 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 ||||||| ||| | ||| | | || || | |||||| || || | || |||| Sbjct 187590 GGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 187649 Query 129968 ATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG-----CAAAC 130021 | | | ||| | || ||| || ||| |||| | || | |||| Sbjct 187650 A----CACGCTGCTCCGGCAGCTTGGTCACCAGCTTC--GAGTACAACAGACAAGCAAAG 187703 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | ||| || ||||| ||||| || || ||||||| |||||| |||||| Sbjct 187704 TCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATG 187763 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 ||||| |||||||| | |||||| || | ||||| ||||| ||||||||||| |||||| Sbjct 187764 AGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCC 187823 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTT-GTATCAAACCACTT 130200 ||| || || || | |||||||| | | ||| | ||||| | || |||| | Sbjct 187824 ACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCT 187882 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 130241 | |||||| |||||| || | |||||||| ||||| Sbjct 187883 TAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCT 187923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618419197989200