Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1829 91.5 4e-13 seq1469 89.7 2e-12 seq237 89.7 2e-12 >seq1829 Length=1231 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 169 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 228 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 229 CCCTGCTTCTCCA 241 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 969 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 1028 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 1029 CCCTGCTTCTCCA 1041 >seq1469 Length=1909 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 1743 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 1802 Query 74548 TCGGGCA 74554 ||||||| Sbjct 1803 TCGGGCA 1809 >seq237 Length=40644 Score = 89.7 bits (98), Expect = 2e-12 Identities = 195/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 206444 CACACTGGTCAATATATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCAT 206503 ||| |||||| | || || || || | ||||| || | ||||| || || || || | Sbjct 1690 CACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGT 1631 Query 206504 TAGAAGTTCCATTTGTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTA 206563 | || | || || || || | || | ||| ||| ||| || || || ||| | Sbjct 1630 TGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGA 1571 Query 206564 ATCCAATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTC 206623 ||||| ||||||||||| || || || ||||| | ||| | || | |||||| | Sbjct 1570 TGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGC 1511 Query 206624 CATCAACACTATCACTTTCCATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCG 206683 | |||| | ||| | ||| || | || || || ||| |||||||| ||||| | Sbjct 1510 CTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGG 1451 Query 206684 TTCCAGCATTAAATAAAGTAGGAGTAGCATGTGTAAAATATTTTTGAGACAT 206735 | |||||||| || | || || || || || || || ||||||| ||||| Sbjct 1450 TACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACAT 1399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515214212612210