Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq237 214 2e-50 seq120 140 4e-28 seq92 109 6e-19 seq28 91.5 2e-13 >seq237 Length=40644 Score = 214 bits (236), Expect = 2e-50 Identities = 531/788 (67%), Gaps = 26/788 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTA-CACGCGTGTCCGTGAGACGTAC 53251 |||||||||| || | || |||||| ||||| | || | | | |||||| ||| Sbjct 1334 TCATGCGCGTGGCTCTAGGCATCCACAA-GACGAACATCAAGGCGGCACTTGAGACTTAC 1392 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| ||||| | ||| || |||||||| || || |||||||| |||||||| Sbjct 1393 GAACTCATGTCGCAAAAATTCTTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACC 1452 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | || || |||| |||||| || |||| ||| |||||||||| || || ||| Sbjct 1453 CCACGTCCACAATTGTCTTCGTGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGC 1512 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || || || || || || ||||||| ||||||||||||| | || || || || ||| Sbjct 1513 ATTTATGACACTCTGAAACAGTGTGCGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATC 1572 Query 53432 -CACTGCTCGAACGTCCG---TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG- 53486 ||| | ||| |||| | | ||| || || ||| || ||||||||| ||| Sbjct 1573 AGTATGCAC-AACATCCGAGCTACTAACAGC-TAC--ATCCGCGGCACGAACGGC-TCGT 1627 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || | || ||| | || ||||| || || || ||| | ||||| || ||||| |||||| Sbjct 1628 CCAACGGCATCATCCCCATGCTGCGAGTGTTTAACGATACGGCACGTTACGTGGACCAGG 1687 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 |||| || || |||||||| || || || || || || || ||||||||||| || | Sbjct 1688 GTGGAGGTAAACGCAAGGGATCATTTGCGATTTATCTGGAACCGTGGCACGCTGATGTGT 1747 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC--TGC-CGTGACC 53663 | ||||| | || ||||| ||| || ||| || ||| ||| | ||| |||||| Sbjct 1748 TTGAGTTCTTGGATCTGCGCAAGAACCATGGTAAC---GAGCTGCACCGTGCACGTGACT 1804 Query 53664 TGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGT 53723 |||| ||||||||| | ||||| || |||||| | |||||| | | ||| Sbjct 1805 TGTTCTATGCTCTGTGGGTGCCGGATCTATTCATGAAGCGTGTGGAGGCCAATGGCAAGT 1864 Query 53724 GGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTT 53782 || || | || || |||||| ||||| || | | ||| || || |||||||| Sbjct 1865 GGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTGTACGAGTG-CTGGGGAGAGGAGTT- 1922 Query 53783 AACGAGA---TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 ||||| ||| | || ||||| | | |||||| | |||| |||| || Sbjct 1923 --CGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCGCCCGCAAGACAATCAATGCT 1980 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| || || || | ||| | |||||||| ||| | ||||| Sbjct 1981 CAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAGACGGGCGTGCCTTTCATGTTA 2040 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGC 53959 |||||||| | | |||| ||| || ||| ||||| ||||| || |||||| Sbjct 2041 TACAAGGACGCCGCCAACCGCAAGTCTAATCAGCAGAACCTCGGCACGATTCGCTCGAGC 2100 Query 53960 AACTTATG 53967 ||||| || Sbjct 2101 AACTTGTG 2108 Score = 159 bits (176), Expect = 4e-34 Identities = 530/812 (65%), Gaps = 33/812 (4%) Strand=Plus/Plus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||||||| |||||||||| || |||||||| | | ||| ||||| Sbjct 2239 ACACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAAT 2298 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||||| | || ||||| || | | || ||||| |||||| | || ||| ||||| Sbjct 2299 TCCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATC 2358 Query 55253 ATGCTCGGATTGCCCTTCGAC--TCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC- 55309 | | | || | ||||| || | | || || || | ||| || | |||||| Sbjct 2359 CTCATGGACTTTGCGTTCGAGAGTCCGGAG--GCGCGTGAGCTCAACAAGAATATCTTCG 2416 Query 55310 AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACC 55369 || | |||||||| || | | ||| ||| | ||||| | | ||| | Sbjct 2417 AGAC-CATCTACTACGCTTCTATGGAGACGTCAATGGAACTGGCCACGGAATTGGGCCCG 2475 Query 55370 TACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG--- 55426 |||||||| |||| | |||||| || |||||| | ||||||||||| | ||| Sbjct 2476 TACGAGACTTTCCAGGGTTCGCCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGAAC 2535 Query 55427 GGCAAGTCTGACCCCA---TGTTTGACAAGT------TGAAGCATGACATTCACTTGTGG 55477 | || | || | || ||| ||| | | ||| | | | | | Sbjct 2536 GTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAAC 2595 Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| ||||| || || || || ||||| ||||| || ||||| ||||| |||||| | Sbjct 2596 GGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTC 2655 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || || |||||| | |||| |||| ||| | ||||| ||| ||||| || || Sbjct 2656 GGTAATAACGAGTCTATCGAACCGTTCACCTCTAACATGTACAACCGCCGCGTGCTTGCG 2715 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || |||||| ||| | |||||| |||| | || || ||| || | |||| Sbjct 2716 GGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGG 2775 Query 55658 AACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG- 55714 || || | | | ||| ||| | |||| || || || |||||| || || Sbjct 2776 GCTCCTGAGGTGCGTAACCAGATCTTGAATG--ACGGCGGTTCGGTGCAGAATGTG-AGC 2832 Query 55715 ---ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 ||||| | ||||||||| ||| ||||||||||||||| |||||| | Sbjct 2833 TCCATTCCGGACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAG--T 2890 Query 55772 CTGATT---GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | |||| ||| || ||| ||||||||||| |||||| ||| ||||| |||||| Sbjct 2891 C-GATTCTGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAAC 2949 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 || ||| | | || || |||| | | |||||||||||||||| ||||||| Sbjct 2950 ATTCACATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAG 3009 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 ||||| ||||||||||| |||||||| |||| Sbjct 3010 AAGGGGCTCAAGACGGGCATGTACTACATGCG 3041 >seq120 Length=126101 Score = 140 bits (154), Expect = 4e-28 Identities = 248/362 (69%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||| || || |||||||| || | ||| || | |||||| || Sbjct 26134 ATCCCGTGCCGATACCATCACTGCCGTTGACAAGCACCATAGGGATAATAGGAATATACC 26075 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 ||||||| || | | |||||||| || | || |||| |||| ||||| | Sbjct 26074 ACTCCGGTTCAATCGACTGACCGTCTTCGTCTAGATAGTTCAGAACGTCGTTGTCTAGTG 26015 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 | ||| | || || || || | | || ||||| ||||| || || || |||| Sbjct 26014 GGTCGTAGATTCGGCGCGTGAGCTGCTCCAGGTTGGTGAAAATGTAACGAGAACTAGCCG 25955 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||||||| ||||| ||||| || ||||| || ||| || || |||| | | Sbjct 25954 CATCCTTACCACCCATCAGCCTTGTACCAAATTGACCAATTGGGGATAGAAGGTGAACAT 25895 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 ||||| || ||||||| ||| |||| |||||| || |||||||| || ||| |||| Sbjct 25894 TGTTGCTTCCAACGAAATCCTGCGCCATATTCACGATACAGCCCTGCAAACCCGCCTCAC 25835 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 |||||||||| || | ||||| | || ||||| |||||||| || ||||| | |||| Sbjct 25834 CGTGGTGATATGCAGAGTGCTCAGAGACATATCCAGCCAACTGTGCTACCTTGAGCTCCG 25775 Query 152234 TC 152235 || Sbjct 25774 TC 25773 >seq92 Length=73546 Score = 109 bits (120), Expect = 6e-19 Identities = 298/447 (67%), Gaps = 12/447 (3%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || ||||||||||||||||||||||||| || | |||||| | || |||||| ||| | Sbjct 61295 CCCGTTCCGATACCCTCTGCACCATTCACGAGCAGCATCGGGATGATAGGAACATAGTGC 61354 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA--CTCG 117269 ||||||| || | | ||| ||||| | |||| | || ||| | || |||| Sbjct 61355 ACAGGCTCAACAGGGAAACCATCGTCGTCGGCGTAGCGCAACAACGCGTCATCCTCCTCG 61414 Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAA--TGTAACGAGAGCTTGC 117327 | ||| | || || | || | |||| ||| ||||||||| || || Sbjct 61415 GG--GAACAGCAGACGAGTGTAC--TTCTGGAGCAGTGTAAAGATGTAACGAGGACTAGC 61470 Query 117328 AGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAG 117387 ||||||||||| || | || || || || || || || | || | | || Sbjct 61471 GGCATCCTTGCCTCCTTGTAACCGGGTGCCAAACTGGCCTGATGGGTACAGTAAGGGGAG 61530 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTC 117447 || || | || ||| ||| || |||| ||| ||||| || || | ||||| Sbjct 61531 ATTATTAGAACCGACATAGTCCTGCGCCATGTTAACAATTGTCGAGTGCAACGAAGCCTC 61590 Query 117448 ACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGT 117506 || |||||||| ||||| ||||| | || ||||||||| ||||| |||||||| | | Sbjct 61591 GCCGTGGTGATAGGCCGTGTGCTCACTGCA-GTAGCCCGCAAGCTGGGCCACCTTGACCT 61649 Query 117507 CTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGAC 117566 | ||| || || ||| ||||| ||||| | ||||||||||| ||| |||| Sbjct 61650 CACGCGTAAGTTTGCGCTTCAGGCATGCATAGAGAACCTTGCGCTGCGAAATCTTGAGAC 61709 Query 117567 CATCCGCCACGTGA-GGGATCGAACGC 117592 |||| |||| ||| || | ||| ||| Sbjct 61710 CATCAACCAC-TGACGGTAGCGACCGC 61735 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/289 (68%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| || | || || ||||||||||| ||| | ||| || |||||||| Sbjct 61448 GTAAAGATGTAACGAGGACTAGCGGCATCCTTGCCTCCTTGTAACCGGGTGCCAAACTGG 61507 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || || | || | | ||| || || | || || | | ||| |||| || ||| Sbjct 61508 CCTGATGGGTACAGTAAGGGGAGATTATTAGAACCGACATAGTCCTGCGCCATGTTAACA 61567 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || |||| || || ||||||||||| ||||| ||||| | ||| ||| Sbjct 61568 ATTGTCGAGTGCAACGAAGCCTCGCCGTGGTGATAGGCCGTGTGCTCACTGCAGTAGCCC 61627 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268 || | ||| |||||||| | || ||| || || ||| || || || || | ||| Sbjct 61628 GCAAGCTGGGCCACCTTGACCTCACGCGTAAGTTTGCGCTTCAGGCATGCATAGAGAACC 61687 Query 152269 TTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGA-GGAATCGAACGC 152316 |||||||| || || | ||| || ||||| ||| || | ||| ||| Sbjct 61688 TTGCGCTGCGAAATCTTGAGACCATCAACCAC-TGACGGTAGCGACCGC 61735 >seq28 Length=140343 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 124950 CCCATGGCGTCCACATTGGCGGTATACTCGGGCTGATCAAAAGACAGTTTCACATGGGAC 125009 |||| |||||||||| ||| || ||||||| | | |||||||||| ||||||||||||| Sbjct 6956 CCCAAAGCGTCCACATCGGCCGTGTACTCGGCCAGTTCAAAAGACACTTTCACATGGGAC 6897 Query 125010 TGGGCACCTAGGTTGTACACCTC 125032 ||||| |||||||||||||| Sbjct 6896 ATTGCACCCAGGTTGTACACCTC 6874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547201840786000