Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq237 338 7e-88 seq92 174 2e-38 seq1125 141 1e-28 seq212 82.4 9e-11 >seq237 Length=40644 Score = 338 bits (374), Expect = 7e-88 Identities = 1144/1753 (65%), Gaps = 64/1753 (4%) Strand=Plus/Minus Query 80036 GCGTCCGCAGAT--AGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 |||||||| || ||||||||||||||||||| ||||||||||| |||| | |||||| Sbjct 3048 GCGTCCGCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCAT 2989 Query 80094 AGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || | ||||| ||| || | | ||| |||||||| |||||| |||||| Sbjct 2988 CGATGTAAGCTTGCTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACA 2929 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213 |||| | || |||||||| || | || || | ||| ||||| || || ||||| || Sbjct 2928 GATGTAGGCACCACGATCCGCAGACAGGTCCAGAATCGACTTCTGCTTGATCTCCCACAC 2869 Query 80214 -----TGTACGATACACCTTACGAAGCTCCTCTGGAATGTC---CAGATTTTGCACACTG 80265 ||||| | | |||| || | | || |||||| || ||| ||||| Sbjct 2868 CGTCTTGTAC--TTCTCCTT--GATG-TGGTCCGGAATGGAGCTCACATTCTGCACCGAA 2814 Query 80266 CCACCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGA 80325 || ||||| || | || || || || |||| | ||| ||||| |||| ||| Sbjct 2813 CCGCCGTCATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGC 2754 Query 80326 TCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATAC 80385 || |||| |||| |||||| | ||| |||||||||||| || ||| || ||| Sbjct 2753 TCATTCATCAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTAC 2694 Query 80386 AGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCC 80445 | ||| | ||| | || || | | |||||| || ||||||||||| ||||| |||| Sbjct 2693 ATGTTAGAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCC 2634 Query 80446 GTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGA------TATCC 80499 ||||||||||| |||||| || ||||| ||||||||| ||||||| | ||| Sbjct 2633 GTCGGCATCGGCGCGACCAGGAGCGAATTGCGCAGGCCG---TTCTTGACCACCTTCTCC 2577 Query 80500 T--CGCGCAAATCTGACCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTG 80555 | ||||| | | || | | | || || ||||| |||||| ||| ||| Sbjct 2576 TTAAGCGCAGCCCAGTCCCACAGACCGGAGGAAGGC-GTGACGTTCCACATATCGAACTG 2518 Query 80556 CAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCC---TCCGTCTT 80612 ||||| |||| || || || ||| ||| ||||||||||||||| |||| | Sbjct 2517 GAAGATACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCG---T 2461 Query 80613 GGCCAGCTC---ACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTT 80669 |||||| || ||| ||||||| | |||| || ||| ||| |||| ||| Sbjct 2460 GGCCAGTTCCATTGACGTCTCCATA---GAAGCGTAGTAGATGGTCTCGAAGATATTCTT 2404 Query 80670 GTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGC 80729 ||| | | ||||||| || ||||||| ||| |||| | ||||| |||| || Sbjct 2403 GTTGAGCTCACGCGCCTCCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGC 2344 Query 80730 CAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCG-ATCGCTCGGCCTCCG 80788 |||||||| || || || | | || ||||| ||| |||| | || || ||||| Sbjct 2343 AAGGCCCTGCACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGC-GAGCCTCAA 2285 Query 80789 GAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAA 80848 || ||||| |||| |||||||| ||||||||||||||| | ||| | Sbjct 2284 TAACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGA 2225 Query 80849 CATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGG 80908 |||||| || |||| ||| |||| | || || || || || || || Sbjct 2224 CATCATACAGCTTCTTGTAGTTGAATACGGCGTTCTCAACGAACTTGGGGAGCGCCACGG 2165 Query 80909 ACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACA 80968 |||||| ||||||||||||||||| |||| ||| |||| | | ||| ||||| Sbjct 2164 ACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTCACAGCACA 2105 Query 80969 AATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCT 81028 | || || ||| || || ||||| | ||| || |||||| |||| ||||||| Sbjct 2104 AGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCT 2045 Query 81029 TGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCT 81088 |||| ||||| | || || ||||| | ||| | | || || ||| ||| | || Sbjct 2044 TGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCT 1985 Query 81089 CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCG 81147 | || |||| ||||||| |||||| | | ||||| | | ||| || Sbjct 1984 GTTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTC- 1926 Query 81148 TCGAACT--TGGCACCGTGA--AGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 ||||||| | | || | || ||| || | || |||||| || || | || Sbjct 1925 TCGAACTCCTCTCCCCAGCACTCGTACAGACCGG---GAGC-CTCGTTGGGACAGAACAA 1870 Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263 ||| | | | | ||| ||| ||||||||| || || | ||| || || Sbjct 1869 ACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATA 1810 Query 81264 GAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||||| ||| || ||| || | ||| | ||| ||||| ||||| || | || | Sbjct 1809 GAACAAGTCACGTGCA-CGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACT 1751 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGC 81379 | | | || || ||||| || |||||||| | || | || |||||||| || | Sbjct 1750 CAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTC 1691 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 ||||||||| |||||||| || || ||||||| || |||| ||| |||||||| || | Sbjct 1690 CACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGT 1631 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTGATTGA 81497 ||| |||||||| || ||| | | | | || || | ||| || Sbjct 1630 TGGACGAGCCGTTCGTGCCGCGGAT--GTAGCTGTTAGTAGCTCGGATGTTGTGCATACT 1573 Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 | || ||||| |||| |||||| || || |||||| | |||| || |||||||| Sbjct 1572 GATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAAT 1513 Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT 81617 || || || || | | |||| | | |||||| || |||| || || | | Sbjct 1512 GCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGG 1453 Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTC 81677 | || ||||||||||| || ||||| ||||| |||| | | ||||| || || Sbjct 1452 GGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTC 1393 Query 81678 ATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736 || || || || ||| | || ||||| ||| || || | ||| || ||||| | Sbjct 1392 GTAAGTCTCAAGTGCCGCCTTGATGTTCGTC-TTGTGGATGCCTAGAGCCACGCGCATGA 1334 Query 81737 ACATGTACTGGGG 81749 ||| | |||||| Sbjct 1333 TCATCTGCTGGGG 1321 >seq92 Length=73546 Score = 174 bits (192), Expect = 2e-38 Identities = 204/274 (74%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 |||| || || |||||| ||| ||||||||||| | || || ||||| ||| || Sbjct 61719 GTGGTTGATGGTCTCAAGATTTCGCAGCGCAAGGTTCTCTATGCATGCCTGAAGCGCAAA 61660 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAG--AGCAAACGGCCT 32095 || || |||| | |||||||| ||||| |||||||| |||| |||| ||||||| Sbjct 61659 CTTACGCGTGAGGTCAAGGTGGCCCAGCTTGCGGGCTACT--GCAGTGAGCACACGGCCT 61602 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 |||||||||||||||| ||| | || || ||||| ||| | || ||| ||| ||||| Sbjct 61601 ATCACCACGGCGAGGCTTCGTTGCACTCGACAATTGTTAACATGGCGCAGGACTATGTCG 61542 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 || | ||||| || |||||| | ||||| || |||||||| |||||| | || | Sbjct 61541 GTTCTAATAATCTCCCCTTACTGTACCCATCAGGCCAGTTTGGCACCCGGTTACAAGGAG 61482 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||||||||| || || | ||||||||||| || Sbjct 61481 GCAAGGATGCCGCTAGTCCTCGTTACATCTTTAC 61448 >seq1125 Length=3167 Score = 141 bits (156), Expect = 1e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 660 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 719 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| |||||||||||||||||||| || ||| Sbjct 720 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGAC 779 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || || ||||| |||||||| | || || || | ||||| Sbjct 780 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 839 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 840 AACATCCAGAAGG 852 >seq212 Length=44092 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || || |||||||||||||| || || ||||| ||||| || ||||| | || Sbjct 8240 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 8181 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || | ||||| || |||| ||||| ||| || || || || ||||||| || Sbjct 8180 ACTCTGTCGGACTACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGTCTGCGT 8121 Query 27628 GGTGG 27632 ||||| Sbjct 8120 GGTGG 8116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570295643218400