Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq67 170 2e-37 >seq67 Length=90363 Score = 170 bits (188), Expect = 2e-37 Identities = 463/698 (66%), Gaps = 13/698 (2%) Strand=Plus/Plus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || |||||||| ||||| ||||| | || || || || | ||| || | | || Sbjct 87993 GGAGACCGGACGGGGACAGGGACTTTGTCGGTATTTGGGGCTCAGATGCGCTTTAGTCTG 88052 Query 34211 CGGGG---CGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||| || || ||| |||||||||| || | || | ||||| || |||| ||| Sbjct 88053 AGGGATAACGTGTTCCCGTTGCTGACGACTAAGAGAGTATTCTGGAGAGGTGTGGCGGAG 88112 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 || | ||||||||| | || |||| |||| | | ||| | || | Sbjct 88113 GAATTACTGTGGTTCATTAGTGGGGATACGAGTGCGCATACGCTGCAGCAGAAGGACATT 88172 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||| | | || || ||||| | | |||||| || || | | || || Sbjct 88173 CATATCTGGGATGGCAATGGATCGCGAGAGTATTTGGACAGTCGTGGACTGCAGTCGAGG 88232 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | || ||| |||| || || || || ||||||||| | |||||||| || |||| Sbjct 88233 GAAGTAGGAGACCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTAC 88292 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGA 34506 || | | || ||||| | |||||||| | ||| || || || | | |||||| | Sbjct 88293 ACGGATATGCATGCAGACTACACTGGACAGGGGGTGGATCAACTTGCTG-AGGTGATCCA 88351 Query 34507 CACCTTGAAGCGGAACCCTGAT-GACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 || | | || || || || ||| | |||| ||| ||| |||||||| || || Sbjct 88352 CAAACT-ACGCACAAACCCGACCGACCGTCGGATTGTGTTGTCTGCGTGGAATCCAGCGG 88410 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATG 34625 ||||| | ||||||||| || || || |||| | || || || ||||| ||| ||| Sbjct 88411 ATCTCAATGAGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTTTACGTGGCGGATG 88470 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685 | ||| | || || ||| | || || || |||| |||||||| | || |||||||||| Sbjct 88471 GCGAGTTATCGTGTCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGCGTGCCGTTCA 88530 Query 34686 ACATTGCTAGTTACGCTCTGCTCACG-TACATGATCGCTCATGTCGTGGGGTTGGTTCCT 34744 |||| || ||||| || || || ||| || || | || || || | || ||| ||| Sbjct 88531 ACATCGCCAGTTATGCGCTACTGACGCGACTTG-TGGCCCAAGTGGCTGGTTTGAAACCT 88589 Query 34745 GGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTC 34804 || || | | || | | || ||||| || | |||||||||||| | |||| ||| Sbjct 88590 GGCGAATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCACGTAGAGCCGCTT 88649 Query 34805 CGGATCCAGCTGCAACGAGAGCCC--CGACCGTTCCCC 34840 | | ||||| |||| | ||| ||||| |||||| Sbjct 88650 CAAAAACAGCT--AACGCGCACCCCGCGACCATTCCCC 88685 Score = 170 bits (188), Expect = 2e-37 Identities = 463/698 (66%), Gaps = 13/698 (2%) Strand=Plus/Minus Query 6505 GGGGAACGGTCG--GGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGG 6562 |||||| ||||| ||| | |||| ||||| | | ||| |||| | |||||||||| Sbjct 88685 GGGGAATGGTCGCGGGGTGCGCGTT--AGCTGTTTTTGAAGCGGCTCTACGTGGTTCAGG 88628 Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622 || | || ||||| || | | || | | || ||||| ||| || | || || Sbjct 88627 TATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGG 88568 Query 6623 GCGATCATGTA-CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCAT 6681 || | || || ||| || || || ||||| || |||||||||||||| || | ||||| Sbjct 88567 GCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCAT 88509 Query 6682 GTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCA 6741 ||| |||| || || || | ||| || || | ||| |||| ||| ||||| || || || Sbjct 88508 GTCAGCCGAACGCTGGTACATCTGACACGATAACTCGCCATCCGCCACGTAAAACTGACA 88449 Query 6742 GAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACAT 6801 | |||| || || || ||||||||| | ||||||| || |||||||| ||| Sbjct 88448 AAACATGTGACATGGTGGCAGCGCCATCTCATTGAGATCCGCTGGATTCCACGCAGACAA 88389 Query 6802 CACGATCCTTCTGTC-ATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGG 6859 ||| |||| | ||| || || || || | | ||| |||||| | | || || || Sbjct 88388 CACAATCCGACGGTCGGTCGGGTTTGTGCGT-AGTTTGTGGATCACCT-CAGCAAGTTGA 88331 Query 6860 TCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTC 6919 ||| | |||||||| | ||||| || | | || |||| || |||||||| | | Sbjct 88330 TCCACCCCCTGTCCAGTGTAGTCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGC 88271 Query 6920 CACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTG 6979 |||||||| || || || || |||| ||| || | |||| || | | || || || Sbjct 88270 CACTGGAATCCATACACTGGTCCCAGGTCTCCTACTTCCCTCGACTGCAGTCCACGACTG 88211 Query 6980 TCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCC 7039 |||| | | ||||| || || | | |||||||| | | || | ||| Sbjct 88210 TCCAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGCGTA 88151 Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099 | | |||| |||| || | ||||||||| | ||||| |||| || ||||| | Sbjct 88150 TGCGCACTCGTATCCCCACTAATGAACCACAGTAATTCCTCCGCCACACCTCTCCAGAAT 88091 Query 7100 ACACGTTTCGTCGTCAGCAGCGGAAATTCG---CCCCGAAGGTTGTATCGGGCCTGTGTG 7156 || | || |||||||||| ||| || || ||| || | | || ||| | Sbjct 88090 ACTCTCTTAGTCGTCAGCAACGGGAACACGTTATCCCTCAGACTAAAGCGCATCTGAGCC 88031 Query 7157 CCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 || || || || | ||||| ||||| |||||||| || Sbjct 88030 CCAAATACCGACAAAGTCCCTGTCCCCGTCCGGTCTCC 87993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448250801210400