Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq261 181 3e-40 seq1125 120 7e-22 seq237 86.0 1e-11 >seq261 Length=37974 Score = 181 bits (200), Expect = 3e-40 Identities = 213/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| |||||||||||| | ||||| | |||||| | | Sbjct 17472 AACTTTATATTTAATTTTTAGTGCTTTTTCTGGTATTGTTGGTACAACATTTTCACTTTT 17413 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||| | || ||| |||||| || | |||||| ||| | || Sbjct 17412 AATTCGTATGGAATTATCACAACCAGGTAATCAAATTTTAATGGGTAATCATCAATTATA 17353 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || ||| |||| || ||||| ||| ||||| | || || || |||||||| | | | Sbjct 17352 TAATGTAATTGTTACTGCACATGCTTTTATTATGGTATTTTTCTTAGTTATGCCTGCTTT 17293 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || || || || ||||| || ||||||||||||| |||||||| ||||||||||| Sbjct 17292 AATTGGTGGATTTGGTAATTGGTTTATTCCTTTAATGATAGGTGCTCCAGATATGGCTTT 17233 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| | | || ||||| |||||||| ||| |||| || || ||||| Sbjct 17232 TCCTCGTATGAATAATATTAGTTTTTGGTTATTACCACCATCATTATT 17185 Score = 132 bits (146), Expect = 1e-25 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||||| Sbjct 3105 AATATTTGACCATCAGTAATTGAAATAACATTAGTAGGAATATAAGCTGAAACATCACCA 3164 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || |||||| || |||| || |||||||||| |||||||| Sbjct 3165 GCTTGAGTTTCAATAATAGGTAATGCAGTTAAAGAACCACCACCAATTTTTTTATT 3220 Score = 109 bits (120), Expect = 1e-18 Identities = 101/125 (81%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 2203 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 2144 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| || | ||||| ||||||||| |||| || ||||||| ||| |||||||||| | Sbjct 2143 CCAAACTTTTTTAAAGG-CAGCAGTGGGGAATTTTGGACAATGAGCGGAAGCTTGATCCA 2085 Query 6865 GTAAT 6869 | ||| Sbjct 2084 GCAAT 2080 Score = 107 bits (118), Expect = 5e-18 Identities = 87/104 (84%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| |||||||| || |||||||||||||| | | |||||| ||||||||||| Sbjct 16788 TTCTGGATGTCCAAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCGCCTGA 16847 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| ||||| ||||||||||||||||| |||| Sbjct 16848 AGGATCATAAAATGATGTATTTAAATTTCTATCAGTTAATAACA 16891 Score = 100 bits (110), Expect = 7e-16 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | |||||| || ||||||||||| | || || | |||||| Sbjct 16966 AAAGGTAATCTATGAAAACTTAAACCTGGAGCTCTCATATTATAAATAGTTGAAATAAAA 17025 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| || ||||| || || | | |||||||||||| || |||||||| Sbjct 17026 TTAATAGCACCTAACAGTGAAGACATTCCGGATAAATGTAAACTAAAAATAGCTAAATCT 17085 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || || |||||||| || || Sbjct 17086 ACCGAAGGTCCTGAATGTGCTTGTACACTTGA---TAAAGGTGGATAAACTGTCCAACCT 17142 Query 371542 GT 371543 || Sbjct 17143 GT 17144 Score = 96.9 bits (106), Expect = 8e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| || ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 21610 TAGGTGTCACTAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 21551 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 21550 GTAACATGATGTATAGGGTCTGACAC 21525 Score = 95.1 bits (104), Expect = 3e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 1516 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 1575 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 1576 GACTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 1635 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 1636 AACGCGTTAGCT 1647 >seq1125 Length=3167 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| |||||||| || ||| Sbjct 820 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCC 761 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 760 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTG 701 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 700 ATGGTCTTGCCCGTCA 685 >seq237 Length=40644 Score = 86.0 bits (94), Expect = 1e-11 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 193523 GGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAAT-GTGAT 193581 |||||| ||||| | ||||| |||| |||| ||| || ||| | ||||| | || Sbjct 2052 GGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAA 1993 Query 193582 GCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGT 193641 ||| || | |||||| || | |||| | | ||| ||||| | ||||||||| || Sbjct 1992 -CCACAGCTGTTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAA 1934 Query 193642 ACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAA 193701 |||| ||| || || | ||| || |||| ||||||||||| || || || || | Sbjct 1933 ACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGA 1874 Query 193702 AGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTC 193747 | | |||||| | |||| ||||| | ||||||||| || || Sbjct 1873 ACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATC 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192499571836580