Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1125 154 3e-32 seq212 105 1e-17 seq165 104 5e-17 seq120 96.9 7e-15 >seq1125 Length=3167 Score = 154 bits (170), Expect = 3e-32 Identities = 149/189 (79%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 850 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 791 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| |||||| ||||||||||| ||||| || ||| || || | || Sbjct 790 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 732 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||||| | || || ||||| ||||| ||||| ||||||| ||||| || || Sbjct 731 AATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 672 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 671 GATCTGCAT 663 >seq212 Length=44092 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | |||||| || || |||||||||||||| | Sbjct 8115 ACCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 8174 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 8175 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 8234 Query 282992 AATACC 282997 || || Sbjct 8235 GATTCC 8240 >seq165 Length=52791 Score = 104 bits (114), Expect = 5e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 317025 CGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGC 317084 || |||||| || || | ||| ||||| ||| || | ||| || || ||||| || Sbjct 15255 CGACGGGAAGCCGTCAAGCTGGCCGTTGGAAATGGCGCGCATAAGCGTAGACTTACCGCA 15314 Query 317085 ACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTT 317144 ||| ||||| ||||| ||||| || || | || ||| || || ||||| |||||| Sbjct 15315 ACCGTTGGGACCGCACAGACCGTAACGGTGGCCACGCTTTAGGCGAAGACGGGCGTTGTT 15374 Query 317145 CAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||| |||||| ||||||| || || || ||||||||||| | || |||||| Sbjct 15375 CAGCAGAATCATACCACCGTAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15426 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| || ||||| |||| ||| ||| || Sbjct 14401 TCCTTGTCCTCACCAGACTGGAAACGCCACTGAATGTAGGCGTTGGCAGTCTCGTCGAGG 14460 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || || || ||||| |||||||||||||| || |||||||| | |||||| || ||| Sbjct 14461 TGCTCTTCAATGTGATGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTGC 14520 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| || | ||| | || || || |||| || || || || Sbjct 14521 TTCCATACCGTACCGACGGTGGGTTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 14580 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 14581 TTACCGGCACCGTT 14594 >seq120 Length=126101 Score = 96.9 bits (106), Expect = 7e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||| || ||||||||||| | | ||| || ||||| ||||| |||||| | ||| Sbjct 25986 CAGGTTGGTGAAAATGTAACGAGAACTAGCCGCATCCTTACCACCCATCAGCCTTGTACC 25927 Query 273833 AAACTGACCC-TCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCA 273891 ||| ||||| | ||| | ||| || | |||||||| || ||| ||||||| |||| Sbjct 25926 AAATTGACCAATTGGGGA-TAGAAGGTGAACATTGTTGCTTCCAACGAAATCCTGCGCCA 25868 Query 273892 TATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGA 273951 ||||||||||| ||||| | |||| ||||||||||| || ||| || | || Sbjct 25867 TATTCACGATACAGCCCTGCAAACCCGCCTCACCGTGGTGATATGCAGAGTGCTCAGAGA 25808 Query 273952 TATAACCACTGAACTGAGCAACCTT 273976 ||| ||| ||||| || ||||| Sbjct 25807 CATATCCAGCCAACTGTGCTACCTT 25783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046711438513780