Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq167 136 8e-27 seq810 113 1e-19 seq1764 91.5 3e-13 >seq167 Length=53098 Score = 136 bits (150), Expect = 8e-27 Identities = 418/633 (66%), Gaps = 25/633 (4%) Strand=Plus/Minus Query 319401 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 319460 || |||||||| ||| || || |||||||| |||||||||| || | ||||| || Sbjct 38288 CTCCACGAACTTGGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTAGTG 38232 Query 319461 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 319520 || || || || || | ||| ||||| | ||||||||| ||||| || | || || Sbjct 38231 AATGATGTTAGTACAGACCGTGTCAAGGAAGCTGGAGTCGTGGGACACCATGATGCTCGT 38172 Query 319521 AACGTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACAGAAAGA 319578 |||| | ||||| ||||||| ||| || | |||| ||||| ||| | Sbjct 38171 CACGTTCGGCAGGTTCGTCAGGTAGTTC--TCGAGCCACGCAACGTTCTTGACATCCAAG 38114 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| |||||||| ||||||||||| | | || ||| | ||||| ||||| || || Sbjct 38113 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 38054 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTG---GGGCAGATTGGCGCTCA 319695 | |||||||| ||||| || || ||||| ||| | | |||| ||| |||| Sbjct 38053 TCCAGTTTCATCTTCCAACCACCCGAAAGGGTGCCCACAGCCTGGGC---TTGCATCTCA 37997 Query 319696 -ATATCAAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTT 319753 | || ||| ||| | || || |||| || | |||| | || | Sbjct 37996 GCGGTGAAGTCCACGCCGGT--AAGCGTGTCAACGACCTCCTGGCGAG---GAGTG---T 37945 Query 319754 CCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGT 319813 |||| | | |||||| |||||||| | | | | | | || || | | Sbjct 37944 CCTTCAGGTCCTCATCAAACAGGATGAAGTCCACAACGGACAGCTCGGCCTCCGAAGCTT 37885 Query 319814 CGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGAGGGGAACCCTTCAAGC 319872 | | ||| || ||| | |||| |||| | || ||| || ||||| || |||||| Sbjct 37884 GCAAGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCGCGC-GACGGGAAGCCGTCAAGC 37826 Query 319873 TGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGA 319932 |||||||| ||| |||||||| || || || ||||| ||||| || || |||||| Sbjct 37825 TGGCCGTTGGAAATGGCGCGCATAAGCGTAGACTTACCGCAACCGTTGGGACCGCACAGA 37766 Query 319933 CCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCA 319992 ||||| |||| || || || ||| | || | ||||||||| ||||| | ||||| Sbjct 37765 CCGTAACGGTGGCCACGCTTTAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCG 37706 Query 319993 TATGCCAGAGAAAATTCACAATCACACAGATCC 320025 || || || || || ||||| | || || ||| Sbjct 37705 TAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 37673 >seq810 Length=7590 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 4369 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 4428 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4429 CCCACGGTGGGC 4440 >seq1764 Length=3097 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 115 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 174 Query 165771 CCACG 165775 ||||| Sbjct 175 CCACG 179 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 1695 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1754 Query 165771 CCACG 165775 ||||| Sbjct 1755 CCACG 1759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057797950422860