Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq134 102 8e-17 >seq134 Length=62988 Score = 102 bits (112), Expect = 8e-17 Identities = 209/309 (68%), Gaps = 4/309 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || ||||| || ||||| || ||||| |||||||| ||||| || || Sbjct 14499 ATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGG 14558 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTA 17351 || ||||| ||||| || || || | | || ||||| | || |||| || | Sbjct 14559 AAGCCGTAGAAGCAACGAGCCTCAGGCACCTGTACTTCATTGCTAAA--GTTCATAGCCA 14616 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 | || |||||||||||||| || || ||||| || || ||||| | ||||| ||||| | Sbjct 14617 GGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGT 14676 Query 17412 ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 |||| ||| || | ||||||||| | || | | |||| |||| Sbjct 14677 GACGCTCGTTGTCTGTGAGGTTTCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTT 14736 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531 | | ||||| || || ||| | ||||| || ||||| | ||| | || | | || | Sbjct 14737 CCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGA 14796 Query 17532 TGGGGAATA 17540 ||||||||| Sbjct 14797 TGGGGAATA 14805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533165966960