Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq73 114 1e-20 >seq73 Length=89798 Score = 114 bits (126), Expect = 1e-20 Identities = 195/278 (70%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 18948 TGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTT 19007 ||||||||| |||| || |||| || || |||||||||| ||| ||||||||| Sbjct 87860 TGGAATCCAGCGGATCTCAATGAGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTT 87919 Query 19008 TACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTT 19067 ||||| || | || || ||||| || || | |||||| | |||| || |||||||| Sbjct 87920 TACGTGGCGGATGGCGAGTTATCGTGTCAGATGTACCAGCGTTCGGCTGACATGGGCCTC 87979 Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTAC-CTACATAGTAGCGCATGTTAC 19126 || || ||||||||||| || | ||||| || || || | || | || || || || | Sbjct 87980 GGCGTGCCGTTCAACATCGCCAGTTATGCGCTACTGACGCGAC-TTGTGGCCCAAGTGGC 88038 Query 19127 AGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCA 19186 || | ||| | || || || || || | || || |||||||| | ||| |||| || Sbjct 88039 TGGTTTGAAACCTGGCGAATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCA 88098 Query 19187 --TATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCC 19222 || || |||| |||| |||||| | || |||| Sbjct 88099 CGTAGAGCCGCTTCAAAA--ACAGCTAACGCGCACCCC 88134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399494641868490