Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq73 113 3e-20 >seq73 Length=89798 Score = 113 bits (124), Expect = 3e-20 Identities = 398/614 (65%), Gaps = 6/614 (1%) Strand=Plus/Minus Query 101642 GTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACA 101701 || || || |||| || || ||||| | ||| ||| ||| | || | ||| | | Sbjct 88149 GTGGGGAATGGTCGCGGGGTGCGCGTTAGCTGTTTTTGAAGCGGCTCTACGTGGTTCAGG 88090 Query 101702 TAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGA 101761 || | ||| ||||| || ||| | |||||||| || ||||| | | || || || Sbjct 88089 TATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGG 88030 Query 101762 GCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATA 101821 || | | | || | || | ||| || || ||||| || ||||| || | ||||| Sbjct 88029 GCCACAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATG 87970 Query 101822 TCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTT 101881 ||||| || | || |||| ||||| || | || ||||| || ||||| |||| Sbjct 87969 TCAGCCGAACGCTGGTACATCTGACACGATAACTCGCCATCCGCCACGTAAAACTGACAA 87910 Query 101882 AATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATT 101941 || | ||||| || |||| | |||| | | | || | |||||| ||| ||| Sbjct 87909 AACATGTGACATGGTGGCAGCGCCATCTCATTGAGATCCGCTGGATTCCACGCAGACAAC 87850 Query 101942 AACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCA 102001 | |||| | || || |||||||| || | | |||| || | ||| || Sbjct 87849 ACAATCCGACGGTCGGTCGGGTTTGTGCGTAGTTTGTGGATCACCTCAGCAAGTTGATCC 87790 Query 102002 ACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCA 102060 || || | ||| | || || || || || | || | ||||| || || | ||| Sbjct 87789 ACCCCCTGTCCAGTGTAGTCTGCATGCATATCCGTG-TACTTGGCTCCAAAGTGACGCCA 87731 Query 102061 CTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATC 102120 ||| ||||||||||| ||||| || |||||| | || || | | ||| | | || Sbjct 87730 CTGGAATCCATACACTGGTCCCAGGTCTCCTACTTCCCTCGACTGCAGTCCACGACTGTC 87671 Query 102121 TAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACG-CCAGCTGCTGATAGC-TCT 102178 ||| | || |||||||| ||||||| || || | | || |||||| ||| | | Sbjct 87670 CAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGC-AGCGTAT 87612 Query 102179 TTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAAT 102238 || || ||| || || || ||||||| | ||| || | ||||||||||| ||| Sbjct 87611 GCGCACTC-GTATCCCCACTAATGAACCACAGTAATTCCTCCGCCACACCTCTCCAGAAT 87553 Query 102239 ACTCTCTTAGTAGT 102252 ||||||||||| || Sbjct 87552 ACTCTCTTAGTCGT 87539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361242737916422