Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq134 277 2e-69 seq241 127 2e-24 seq202 98.7 1e-15 >seq134 Length=62988 Score = 277 bits (306), Expect = 2e-69 Identities = 436/614 (71%), Gaps = 14/614 (2%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || ||||| ||| |||||| | |||||||| || | | ||| |||||| |||||| Sbjct 14827 GAAAACCCGAACCGCTTCGTGCTATTCCCCATCCAGGAGCACGACGTGTGGCAGATGTAC 14768 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAG 116709 || ||||| ||||| |||||||| | || ||| ||||| || | || | | | || Sbjct 14767 AAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAG 14708 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| | | | ||||||||||| || |||||||||||||| ||||||| || Sbjct 14707 -GACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTT 14649 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTG 116827 |||||||| || |||||||| |||||||| |||| || | ||| || | || || Sbjct 14648 TGCCGCCAGTGATGGCATCGTGAACGAGAACCTGGCTATGAAC-TTTAGCA-ATGAAGTA 14591 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 |||||| | ||||| || |||||||||||||| || || ||||| |||||| | ||||| Sbjct 14590 CAGGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAAATTGCCATTGAGAACATCCACTCA 14531 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || |||| ||| ||||| ||||||||| | | | || |||| || | | || Sbjct 14530 GAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGAGAAGGACCACC-- 14473 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT-GGGCGCTGCG 117003 || || || || ||||| || ||||| || | ||||||| |||| ||||||| | Sbjct 14472 -TGCTGCGTGCAATTGAGACCATCCCGTGTGTGACCAAGAAGGC-GAGTTGGGCGCTAAG 14415 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||| || | | || | || | | | ||||| || |||| || || || || || Sbjct 14414 ATGGTGCGACCCGAAAGTGTCCTCATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGA 14355 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| ||||||| |||||| || | |||| || ||||||||||| || || ||||| Sbjct 14354 GGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCAT 14295 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 ||| || |||| ||| |||||||||||| | || || ||| |||| ||||| Sbjct 14294 GCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTT 14235 Query 117184 TGCCTGTTTGCTGT 117197 ||| ||| || ||| Sbjct 14234 TGCTTGTCTGTTGT 14221 >seq241 Length=42966 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| ||||||| || | | Sbjct 761 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 820 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||| || || | |||||| Sbjct 821 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAG 880 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 881 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 940 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 941 ATCCAGAAGG 950 >seq202 Length=44642 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 8798 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 8739 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| |||||| || || ||| |||| || | Sbjct 8738 ACTCTGTCGGACTACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGTCTGCGT 8679 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 8678 GGTGGTGGC 8670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206821858720