Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1085 114 3e-20 seq134 114 3e-20 >seq1085 Length=3282 Score = 114 bits (126), Expect = 3e-20 Identities = 262/386 (68%), Gaps = 14/386 (4%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || ||| | ||| |||| ||||| || ||||||||||| || || || |||| Sbjct 579 CTACCCCACTTGTTGTTCTACGGCCCTCCAGGCACAGGCAAGACATCTACTATTGTGGCT 638 Query 254061 CTGGCCCG--AACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 | | | ||| || |||||| || || || | ||| | || ||||| || Sbjct 639 GTAGGGAGGCAACTCT-TTGGGCCGGACTTCCGCAAGAACGGCCGCTTCCTGGAGCTCAA 697 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 ||| || ||||| || || | | || || || || ||| |||||| ||| || || Sbjct 698 CGCGTCGGACGATCGTGGTATTAAGGTGGTGCGTGAGAAGGTCAAGAGCTTCGCCCAGGG 757 Query 254177 GTCGATTT-CGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGG 254235 | ||| | || | | | ||| || || |||||| || | | |||||||||| Sbjct 758 TGCCATTAGCAGCGCT---AGTGGACTG-CCACCCTTCAAGATCATCGTACTGGACGAGG 813 Query 254236 CGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCG 254295 | ||| ||||||||| ||||| ||||| || || || || | |||||||| ||||| Sbjct 814 CAGACTCCATGACGGGAGACGCACAGTCAGCACTGCGTCGTATGATGGAGAACTACTCCA 873 Query 254296 TTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGC 254353 || ||||| || || ||| | || |||||||| |||| ||||| | || |||| Sbjct 874 AGGTCACGCGCTTCTGTCTGATCTGTAACTACGTAAGTCG--TATCATTGAGCCTGTGGC 931 Query 254354 TTCTCGGTGCGCCAAGTTTCGATTCA 254379 || || || |||||||| || |||| Sbjct 932 CTCCCGTTGTGCCAAGTTCCGCTTCA 957 >seq134 Length=62988 Score = 114 bits (126), Expect = 3e-20 Identities = 262/386 (68%), Gaps = 14/386 (4%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || ||| | ||| |||| ||||| || ||||||||||| || || || |||| Sbjct 62410 CTACCCCACTTGTTGTTCTACGGCCCTCCAGGCACAGGCAAGACATCTACTATTGTGGCT 62351 Query 254061 CTGGCCCG--AACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 | | | ||| || |||||| || || || | ||| | || ||||| || Sbjct 62350 GTAGGGAGGCAACTCT-TTGGGCCGGACTTCCGCAAGAACGGCCGCTTCCTGGAGCTCAA 62292 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 ||| || ||||| || || | | || || || || ||| |||||| ||| || || Sbjct 62291 CGCGTCGGACGATCGTGGTATTAAGGTGGTGCGTGAGAAGGTCAAGAGCTTCGCCCAGGG 62232 Query 254177 GTCGATTT-CGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGG 254235 | ||| | || | | | ||| || || |||||| || | | |||||||||| Sbjct 62231 TGCCATTAGCAGCGCT---AGTGGACTG-CCACCCTTCAAGATCATCGTACTGGACGAGG 62176 Query 254236 CGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCG 254295 | ||| ||||||||| ||||| ||||| || || || || | |||||||| ||||| Sbjct 62175 CAGACTCCATGACGGGAGACGCACAGTCAGCACTGCGTCGTATGATGGAGAACTACTCCA 62116 Query 254296 TTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGC 254353 || ||||| || || ||| | || |||||||| |||| ||||| | || |||| Sbjct 62115 AGGTCACGCGCTTCTGTCTGATCTGTAACTACGTAAGTCG--TATCATTGAGCCTGTGGC 62058 Query 254354 TTCTCGGTGCGCCAAGTTTCGATTCA 254379 || || || |||||||| || |||| Sbjct 62057 CTCCCGTTGTGCCAAGTTCCGCTTCA 62032 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||| ||||| ||||| ||| Sbjct 13929 ACGCCTGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGA 13988 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || |||||||||||||| || || ||||| | |||||| | |||| || ||| Sbjct 13989 GAGATCATGTCCATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGC 14048 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACT 157400 | |||| | ||| ||||| |||| ||||||| Sbjct 14049 GAATACAGCAGGCGGTCTGCCACGAACTCAATGTACT 14085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073739957831296