Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq73 138 2e-27 >seq73 Length=89798 Score = 138 bits (152), Expect = 2e-27 Identities = 417/634 (66%), Gaps = 15/634 (2%) Strand=Plus/Plus Query 35223 TTCCAGTT-CTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGG 35281 |||| ||| || || || |||| | | ||||||||||| || | ||| ||| | |||| Sbjct 87527 TTCCCGTTGCTGACGACTAAGAGAGTATTCTGGAGAGGTGTGGCGGAGGAATTACTGTGG 87586 Query 35282 TTCATCAGGGGCAATAC-AG-ACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGA 35339 ||||| || || |||| || ||| | | || ||||| | || || |||||| Sbjct 87587 TTCATTAGTGGGGATACGAGTGCGCATACG--CTGCAGCAGAAGGACATTCATATCTGGG 87644 Query 35340 ACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAG 35399 | | ||||| ||||| || | |||||||||| | || | | || | || |||| Sbjct 87645 ATGGCAATGGATCGCGAGAGTATTTGGACAGTCGTGGACTGCAGTCGAGGGAAGTAGGAG 87704 Query 35400 ATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA---TGATACCT 35456 | ||||||| || || |||||||| |||||||| ||||| || | || |||| | Sbjct 87705 ACCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTACACGGATA--T 87762 Query 35457 GTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGA 35516 | | | || || |||||| |||| | |||||| | || | | | | | || Sbjct 87763 G-CATGCAGACTACACTGGACAGGGGGTGGATCAACTTGCTGAGGTGATCCACAAACTAC 87821 Query 35517 GAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 | ||| || || | |||| | || | || |||||||| |||||| | Sbjct 87822 GCACAAACCCGACCGACCGTCGGATTGTGTTGTCTGCGTGGAATCCAGCGGATCTCAATG 87881 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 ||||| || || ||||| |||||| | ||| ||||| ||||| |||| || || | Sbjct 87882 AGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTTTACGTGGCGGATGGCGAGTTAT 87941 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 |||| ||| |||| ||||| || || ||| || | |||||||| ||||| || || Sbjct 87942 CGTGTCAGATGTACCAGCGTTCGGCTGACATG--GGCCTCGGCGTGCCGTTCAACATCGC 87999 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTT 35754 || | || ||||| | || ||||| ||| ||| | ||||| || || || Sbjct 88000 CAGTTATGCGCTACTGACGCGACTTGTGGCCCAAGTGGCTGGTTTGAAACCTGGCGAATT 88059 Query 35755 TATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAGCA 35814 ||||| || | ||||||| |||||| | || | |||| | ||| | | | || || Sbjct 88060 TATCCACATTATTGGTGATGCACACGTATACCTGAACCACGTAGAGCCGCTTCAAAAACA 88119 Query 35815 GTTGTGCCGCGTCCCTAGACCATTCCCTAAGTTG 35848 | | ||| ||| |||||||||| | |||| Sbjct 88120 GCTAACGCGCACCCCGCGACCATTCCCCACGTTG 88153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989559630875510