Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq134 174 2e-38 seq213 129 8e-25 >seq134 Length=62988 Score = 174 bits (192), Expect = 2e-38 Identities = 392/585 (67%), Gaps = 7/585 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || ||| || || || ||||| ||| || || | |||||| || |||||||| | Sbjct 14221 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGA 14280 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | | || || ||||| || |||||||| || ||||| || ||||| ||| || || | Sbjct 14281 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 14340 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCTG 50130 | ||||||||||| || || || ||||| || | ||| | ||| || || | || Sbjct 14341 AGAAGAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 14400 Query 50131 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 || || ||| || | |||||| |||||||| | ||||| || || || || | Sbjct 14401 TCGGGTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 14460 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | ||| | || | || || || | || || | || || || || | || Sbjct 14461 TTGCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 14520 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 |||| || || || ||||| |||||||| || || || |||||||| || | ||||| Sbjct 14521 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCT 14580 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTC--AGCTAAATTTTCATTCACTATTCCGTC 50366 | | | ||| ||||| | | ||| |||| ||| | || || ||||| || || || Sbjct 14581 CAGGCACCTGTACTTCATTGCTAAA--GTTCATAGCCAGGTTCTCGTTCACGATGCCATC 14638 Query 50367 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT 50426 |||||| ||||| || ||||| || || || || || || |||||| ||| || || Sbjct 14639 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 14698 Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 ||| || |||| || | | || | |||||| | ||||| || ||||| Sbjct 14699 TCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTC 14758 Query 50487 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 ||||| || ||||| | ||| | ||| || | ||||| ||||| Sbjct 14759 CGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 14803 >seq213 Length=42570 Score = 129 bits (142), Expect = 8e-25 Identities = 778/1238 (63%), Gaps = 16/1238 (1%) Strand=Plus/Minus Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 |||| || ||||| ||||| || ||||| ||||| || | || || | || || || | Sbjct 2431 CGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCCTCCGGACTCTCGAACG 2372 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 | | | | ||| || || ||||| || | || || ||||||||||| | ||| | | Sbjct 2371 CAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCACACCAATACCAACAGGACGGT 2312 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | | | || ||| | ||| || || || || || || | || || | || | Sbjct 2311 GACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTCGATGACCTTGT 2252 Query 79535 TGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT-CGTCCA 79593 | || || | || || ||||| ||||| | || || | | ||| || | Sbjct 2251 TCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCTTCTTGTAGTTGAATACGGCGT 2192 Query 79594 TCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 79653 ||| || ||| || | ||| || || |||| || || ||||| ||||||| || Sbjct 2191 TCTCA-ACGAACTTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACCTCATCAGGC 2133 Query 79654 TCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGT 79713 || ||| | || | |||| ||| | ||| || | ||| || || | || || Sbjct 2132 GACGTATACTCCATCACTTCACAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGC 2073 Query 79714 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 |||||| ||| ||| || ||||| || | ||||| || || || |||||| Sbjct 2072 TGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATC 2013 Query 79774 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTAT---CTC 79830 || | || | ||| || ||| | | |||| || ||| | |||| | Sbjct 2012 TGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGATTGT---CTTGCGGGCGCGG 1956 Query 79831 TTTTCTCTTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAACATCGTCTAA 79889 ||| | ||||| | | | | | ||| |||||||| |||||||| |||| | Sbjct 1955 CCTTCACGCTCGTACT-TCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACAG 1897 Query 79890 TCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCAT 79949 || ||| |||| ||||| | ||| ||||| |||| ||| || || ||||| Sbjct 1896 ACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCAT 1837 Query 79950 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTC 80008 || ||||| || | ||| ||||| ||| || | || | | | ||| |||||| | Sbjct 1836 GAATAGATCCGGCACCCACAGAGC-ATAGAACAAGTCACGTGCACGGTGCAGCTCGTTAC 1778 Query 80009 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068 | ||||| ||||| | |||| | | | ||||| ||||||||||||| || | Sbjct 1777 CATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAA 1718 Query 80069 TGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 80128 | || | |||| ||||| ||| ||||| || | ||| | || || | ||| Sbjct 1717 TCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACGTGCCGTATCGTTAA 1658 Query 80129 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 80188 | |||| || ||| || || || || ||||| | || || || ||| ||| ||||| Sbjct 1657 ACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGT 1598 Query 80189 CACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 | | || || || | | | | |||| || || || |||||| || ||||| | Sbjct 1597 TAGTAGCTCGGATGTTGTGCATACTGAT--GCCAATGCCTCCTGCCCACTTGGAGATGCA 1540 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 || || |||| | || ||||| ||||| || || ||||| |||| | | Sbjct 1539 CGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAA 1480 Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366 || || ||||| ||| |||| || || ||||| || | || || | ||||| Sbjct 1479 GAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGTGGGGGTGGCGTG 1420 Query 80367 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 80426 || || |||||| |||| || | ||| ||||||| || | | || | | | Sbjct 1419 GGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTCGTCTT 1360 Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT 80486 || || |||| || || ||||| | ||| ||||| || | ||| || | ||| | Sbjct 1359 GTGGATGCCTAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCACTTTGCCGTG 1300 Query 80487 TATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546 | || | || | |||| || ||||| |||||||| | |||| |||||| Sbjct 1299 GACACGGAAGAGATATCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGTATTCAAAGTC 1240 Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 80584 ||| || | ||||| ||||||| |||| || |||| Sbjct 1239 TCGGTCATGGATAATGGCCGAGTTCAGTTGGTCTTTAT 1202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251543592080