Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq31 132 8e-27 >seq31 Length=136124 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || ||||| || || ||||||||||| || || Sbjct 103749 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATTCAGGGCATCACCAAGCCTGCCAT 103808 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| || || ||||| ||||||| || |||| || |||| Sbjct 103809 CCGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGAC 103868 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| |||| || || | || || || Sbjct 103869 GCGTGGCGTGCTCAAGGTGTTCCTTGAGAACGTGATCCGCGACTCTGTGACGTACACGGA 103928 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || | ||||| | || || || | || ||||| || Sbjct 103929 GCACGCTCGCCGCAAAACGGTGACTGCGATGGACGTGGTGTACGCTCTAAAGCGTCAGGG 103988 Query 16672 CCG 16674 ||| Sbjct 103989 CCG 103991 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || ||||| || || ||||||||||| || || Sbjct 106716 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATTCAGGGCATCACCAAGCCTGCCAT 106657 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| || || ||||| ||||||| || |||| || |||| Sbjct 106656 CCGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGAC 106597 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| |||| || || | || || || Sbjct 106596 GCGTGGCGTGCTCAAGGTGTTCCTTGAGAACGTGATCCGCGACTCTGTGACGTACACGGA 106537 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || | ||||| | || || || | || ||||| || Sbjct 106536 GCACGCTCGCCGCAAAACGGTGACTGCGATGGACGTGGTGTACGCTCTAAAGCGTCAGGG 106477 Query 16672 CCG 16674 ||| Sbjct 106476 CCG 106474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073442701946