Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq213 159 3e-34 seq241 107 2e-18 seq202 96.9 3e-15 >seq213 Length=42570 Score = 159 bits (176), Expect = 3e-34 Identities = 737/1148 (64%), Gaps = 40/1148 (3%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || |||| |||||| || || | ||| || || |||| |||||| || Sbjct 2742 GTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGAGGT 2683 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 ||| ||||| | |||||||||||| || ||||| || || || | || || ||||| Sbjct 2682 GAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGG 2623 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||| |||| | |||||||||||||||| ||| | | ||||| |||| | |||| Sbjct 2622 CGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCA 2563 Query 145231 ATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 ||||| || || | ||| | |||| |||||| ||| |||| || || |||| ||| Sbjct 2562 GTCCCACAGACCGGAGGAAGGCGTGACGTTCCACATATCGAACTGGAAGATACCCTTGCT 2503 Query 145288 GGC-GGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAACTC 145345 ||| || | ||| ||||| || || | ||||| | |||| || || | Sbjct 2502 GGCAGGCGAACCCTGGAAAG--TCTCGTACGGGCCCAATTCCGTGGCCAGTTCCATTGAC 2445 Query 145346 GCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCA 145405 | ||||| || || | || || |||||| || | | |||||||| ||| || Sbjct 2444 GTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCCTCC 2385 Query 145406 TCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACG 145465 |||||| ||| | | || || | ||||| || || || ||||| | || | Sbjct 2384 GGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCACACCAATA 2325 Query 145466 CCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATA---GGATA-TCGATT 145521 || | || || || ||||||| | | || ||| ||| || || | | | Sbjct 2324 CCAACAGGACGGTGACGCATGTTGGAATTGCGAGC---CTCAATAACGGGGTAGTAGTTG 2268 Query 145522 ACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTC 145581 || |||||| | || |||| ||| || | ||||| | | || ||| | Sbjct 2267 AC-GTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCTTCTT 2209 Query 145582 AAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATT 145641 ||| || || | ||||||| | | || || | |||||||| || Sbjct 2208 GTAGTTGAATACGGCGTTCTCAACGA------ACTTGGGGAGCGCCACGGACGCCAAGTT 2155 Query 145642 ACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 || || ||| ||| || |||| || | || | | | || |||||| ||||| Sbjct 2154 GCACACGGCCACCTCATCAGGCGACG-TATACTCCATCACTTCACAGCACAAGTTGCTCG 2096 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 | || || || || || ||||||||| || | |||| ||||||||||| | || Sbjct 2095 AGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACA 2036 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCGC 145818 || | || |||| ||||| | ||||| |||| ||| ||| || | || || Sbjct 2035 TGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAAC--CACAGCTGTTGAGC 1978 Query 145819 ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGC 145878 | | || || |||||| || ||||| ||| | ||| ||| ||| | Sbjct 1977 ATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTC 1918 Query 145879 GGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCC 145938 || |||| ||| |||| |||||| || ||||||||| | || ||| ||| Sbjct 1917 CTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCC 1858 Query 145939 GTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT--CG 145996 ||||| | || |||| ||| || | ||| ||||||||||| || || | ||||| || Sbjct 1857 ATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACG 1798 Query 145997 CGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAGCACACTATAGATG 146053 || | |||| ||| | ||||| ||| || || || ||| || | | | | Sbjct 1797 TGCACGGTGCA--GCTC-GTTACCATGGTTCTTGC-GCAGATCCAAGAACTC-AAACACA 1743 Query 146054 TCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGG 146110 || |||||||||||||| | ||| | || | | ||| || ||||| ||||||||| Sbjct 1742 TCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGG 1683 Query 146111 TCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACG 146170 ||||||| |||| || | | |||||| || |||| |||||| || |||| ||| | Sbjct 1682 TCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAG 1623 Query 146171 CCGTTCGT 146178 |||||||| Sbjct 1622 CCGTTCGT 1615 >seq241 Length=42966 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 950 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 891 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || || ||||| || ||||| |||||||||||||| | | Sbjct 890 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 831 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | ||||| || | ||| || || || || || || || | Sbjct 830 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 771 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 770 AGATCTGCATGA 759 >seq202 Length=44642 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| || |||||||| || | Sbjct 8674 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 8733 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 8734 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 8793 Query 131128 ATTCCT 131133 |||||| Sbjct 8794 ATTCCT 8799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472001459892480