Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq134 120 3e-22 >seq134 Length=62988 Score = 120 bits (132), Expect = 3e-22 Identities = 394/604 (65%), Gaps = 10/604 (2%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || |||||||| || || | |||||| || || || | ||| ||| ||| | | | Sbjct 14229 CAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGA 14288 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CCAGaaaaaaa 93210 || || | || || || ||||||||||| || || || |||||| | || || || || Sbjct 14289 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGA-GCAAAAGGAGCCCGAGAAGAA 14347 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA--TTACTG 93268 || || ||||| ||||||||||||| || ||| || | | || ||| || | | Sbjct 14348 GATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTA---TGAGGACACTTTCGG 14404 Query 93269 CT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | | |||| ||| |||||| || || || | | ||| || | || || || || Sbjct 14405 GTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGC 14464 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | |||| || ||| | | || ||||| || || || | ||| || || Sbjct 14465 ACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTA 14524 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 || || || |||| ||||| || ||||||||||| |||||||| || | ||| || | Sbjct 14525 CACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCTCAGG 14584 Query 93448 GATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 | ||| ||||| ||| ||| | || | || || || || || || ||||| | Sbjct 14585 CACCTGTACTTCATTGCTAAAGT-TCATAGCCAGGTTCTCGTTCACGATGCCATCACTGG 14643 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 | ||||| || ||||| | ||||| || || || ||| | ||| | || || ||| Sbjct 14644 CGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTTCCCC 14703 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | || || || | | | || | ||||| ||||||| || || || || | Sbjct 14704 AGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCT 14763 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGT 93686 | |||||||| | ||| | ||| || | || || || |||| || || || || |||| Sbjct 14764 TCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAATAGCACGAAGCGGTTCGGGT 14823 Query 93687 TATC 93690 | || Sbjct 14824 TTTC 14827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847421419280