Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq134 199 7e-46 seq167 158 2e-33 seq98 116 7e-21 seq155 114 2e-20 seq810 95.1 2e-14 >seq134 Length=62988 Score = 199 bits (220), Expect = 7e-46 Identities = 616/935 (66%), Gaps = 25/935 (3%) Strand=Plus/Plus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATTCATG---ACGCCCGCCTT 9949 ||| ||||| ||||||| || ||||| | || ||||| | ||||| ||||| Sbjct 13880 TTAAAAGTCGGCGTCAAGTGTGAACACCTGCTCCTCGGCCGCAACACCCACGCCTGCCTT 13939 Query 9950 CTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTC 10009 |||||| || || |||||||||||| | |||||||| || || || | || Sbjct 13940 GGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTC 13999 Query 10010 CATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAAT 10069 ||| ||||||| ||||||| | || | ||||| ||| || | | | Sbjct 14000 CATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAG 14059 Query 10070 GCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCG 10129 |||||| ||||||||||| |||||||||| ||| || ||||||||||||| |||| || Sbjct 14060 GCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCA-GCT 14118 Query 10130 GCAG-GGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGC 10188 || |||| | ||||| | || || | |||| | || || || || || | Sbjct 14119 CCACTGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT-C 14177 Query 10189 TCTTTACCACG-TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAAC 10247 || | |||| | | ||||||| || | |||||||| |||| || |||| Sbjct 14178 TCGTGCACACGCTGCTCCGGCAGCTTGGTCACCAGCTTCGAGTACAACAGACAAGCAAAG 14237 Query 10248 TGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCAT 10306 | ||| ||| | || || || || || |||| ||||||||| || | |||||| ||||| Sbjct 14238 T-CTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCAT 14296 Query 10307 GAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCC 10364 ||| || || || |||||||| |||| ||| || || || ||||| ||||| ||| Sbjct 14297 GAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAA--GAAGATTCCC 14354 Query 10365 TCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG----CGGTCGCG-CGAAAAGT 10419 ||||| | | || | || ||||| | | | ||| | ||| | || | | Sbjct 14355 TCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTTTCGGGTCGCACCAT 14414 Query 10420 ATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAG- 10478 || | | || || | |||||||| ||| ||||| ||||| || || || || Sbjct 14415 CTTA-GCGCCCAACTC-GCCTTCTTGGTCACACACGGGATGGTCTCAATTGCA-CGCAGC 14471 Query 10479 AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCG 10538 || | || ||| |||||| || | |||| |||||| ||||| ||| Sbjct 14472 AGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCT 14531 Query 10539 CTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCGTG 10598 ||||| | ||||| || ||| | ||||||| ||| ||| || || Sbjct 14532 GAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACCTGT 14591 Query 10599 ACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAG 10658 ||||| | | |||||| | ||||||||| |||| |||||||| ||| | |||||| Sbjct 14592 ACTTCATTGCTAAAGTTCATAGCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAG 14651 Query 10659 AAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCT 10718 ||| | | || ||||||||||||||| ||||| | || | || ||| | |||||| Sbjct 14652 AAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTT---CCCCAGTCC 14708 Query 10719 ACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTG 10778 | || || | | | ||| ||| | |||||||| |||| | ||||||||| Sbjct 14709 TTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTG 14768 Query 10779 TACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 |||||||| | | |||| | | | |||||||||| Sbjct 14769 TACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 14803 >seq167 Length=53098 Score = 158 bits (174), Expect = 2e-33 Identities = 438/664 (66%), Gaps = 16/664 (2%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| ||||| ||||| ||| ||| ||||| | ||||| || |||||||| Sbjct 38674 CGCCACTGAATGTAGGCGTTGGCAGTCTCGTCGAGGTGCTCTTCAATGTGATGGAAAGCG 38615 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| || |||||||| || | || || ||| Sbjct 38614 TGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTGCTTCCATACCGTACCGACGGTGGGT 38555 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | |||||| ||||| | ||| || ||||| |||||||||| | Sbjct 38554 TCAACCTCACCCGTCAGCATCTTGATCAGCGTCGACTTACCGGCACCGTTGGGGCCAAGC 38495 Query 225161 ACGCCAATCCGGGATGACATTGCA-ACCTG--CGAGTTCACGTTGCT-GAAGATCT--CA 225214 ||| |||| || ||||||| || || | ||| | |||| | || | | | || Sbjct 38494 ACGGCAATACGCGATGACAGAGCGCACGTCACCGAAATGTTGTTGATCGACGGTTTGTCA 38435 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTGGAA 225274 |||||| |||| ||| | ||| ||||||| ||||| Sbjct 38434 CGGCCAG---GGTACTGGTAGGTACAGTTGGTCAGACGAATGATGGGCTTACCCTTGTTC 38378 Query 225275 GTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAGG 225334 | || | | ||||| || ||||| |||||| | || || ||| ||| Sbjct 38377 TTGATGTCAGCAAGGAAACCAGGCTCCGGGAACGTGAATCTGAAGGTAGCAGCCTCCAGC 38318 Query 225335 TCGTAGTAAGATGCAGCCTCGGG--TCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGT 225392 |||||||| | ||||| || || | | ||||||| || ||||| || || Sbjct 38317 TCGTAGTAGGCCTTGGCCTCAGGCTTCACCT--CCACGAACTTGGAAAGGTTGCCCTTGT 38260 Query 225393 GCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGA 225452 || | ||||| || ||| |||| |||| || | || || | |||||||| Sbjct 38259 AGATCTTCAGCTTACGGGTCT---CGTAGTGAATGATGTTAGTACAGACCGTGTCAAGGA 38203 Query 225453 AGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGA 225512 ||| |||||||||||||| |||||| || |||||||| |||| | | |||| | Sbjct 38202 AGCTGGAGTCGTGGGACACCATGATGCTCGTCACGTTCGGCAGGTTCGTCAGGTAGTTCT 38143 Query 225513 TGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGT 225572 |||||| || ||||| |||| |||| |||||| || || || || |||||||| |||| Sbjct 38142 CGAGCCACGCAACGTTCTTGACATCCAAGTGGTTCGTCGGCTCATCAAGAAGCAGAATGT 38083 Query 225573 CAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGG 225632 | || | || || || || | || ||| ||||| ||||| || || || |||| Sbjct 38082 CGGCCTTCTGAAGCATAGCACGGGCCAGCTCCAGTTTCATCTTCCAACCACCCGAAAGGG 38023 Query 225633 AGCC 225636 ||| Sbjct 38022 TGCC 38019 Score = 113 bits (124), Expect = 8e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||||| ||| | || ||||| ||| ||| || | || | | ||| || ||||| Sbjct 39218 GTGAGTAATCATAACGACACCACCGTTGAACTCCTTGATAGCCGTAGCAAGGGCACCAAG 39159 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 || |||||||||||| ||||||| |||||||| || | | | ||| ||| | |||| Sbjct 39158 AGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATCAAGCACCAGGATGTGCGGGTTCAGCCA 39099 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || ||| ||||| | ||| | ||||||||||||||| || || || || || || ||||| Sbjct 39098 CATGGCAGCACCCAGCACGACCTTCACCTTCTGACCACCGGACAGACCACGCATGCGCGA 39039 Query 224629 GTGAGTCGTGAATTCGG 224645 ||| || ||| |||| Sbjct 39038 GTGCGTACCGAACTCGG 39022 >seq98 Length=72503 Score = 116 bits (128), Expect = 7e-21 Identities = 275/406 (68%), Gaps = 12/406 (3%) Strand=Plus/Plus Query 268394 CCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCATATGC 268452 ||||| | || |||||||||||||| ||||| ||||| ||| |||||||| || || || Sbjct 65260 CCACGCCGTGGACTCTCGTGGTTGAACAGGATTCCGTT-CACAGCGAACATTCCGTAAGC 65318 Query 268453 CTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACG 268512 || |||| || || || |||| | ||||| ||| |||| | | ||||| || || Sbjct 65319 TTCGCGGTGATTTACCACACTCCAAAAGGCAAATTGCTTCGCAATTCCATACGGCGAGCG 65378 Query 268513 TGGATGGAAGGGCG--TCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCG 268570 ||| ||||| || | || | ||| || || | |||| || || || | | || Sbjct 65379 TGGGTGGAATGGTGTATCTTCATC--CTGCGGCGTGGCTCGTACCTTCCCGTACAATTCA 65436 Query 268571 GAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCG 268630 || || || ||||||||| | || || ||| || ||||| | || | | |||| Sbjct 65437 CTTGTGGAGGCCTGGTAGAACCTAGTGGTACGTTCAAGTCCGCAAGTGCG--TAGACTCG 65494 Query 268631 --AGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATG 268688 |||| || | |||| | ||||| || || || ||||| | || || || | Sbjct 65495 TAAGCAGCCGCAACACACCCAAAGCGTCCACATCGGCCGTGTACTCGGCCAGTTCAAAAG 65554 Query 268689 ACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGCA 268748 |||| | |||||| | || |||||||| || |||||||||||| || | | || Sbjct 65555 ACACTTTCACATGGGACATTGCACCCAGGTTGTACACCTCATCCGGTCGCACTTTCGCCA 65614 Query 268749 CGAT-CTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 | || | ||| | || | | |||||||||||||| ||||||| Sbjct 65615 CAATCCGGCAC-ATATTGGACGCATCGGTGAGGTCTCCATAGTGCA 65659 >seq155 Length=57635 Score = 114 bits (126), Expect = 2e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 224501 GCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGG 224560 ||||| |||| ||||||| ||| | ||||||||||||||||| | | | ||| ||| Sbjct 34539 GCGCCCAGCGCAGCGCGGTCCAGGTAATTCGTCGGCTCATCCAGCACCAGCAAGTGCGGG 34598 Query 224561 CACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGG 224620 || | ||||| ||| ||| ||| ||| ||||||||||||||||| || ||||| |||||| Sbjct 34599 CAGTTCCACATGGCAGCAGCAATCACAAGCTTCACCTTCTGACCACCCGAGAGACCGCGG 34658 Query 224621 ATC 224623 ||| Sbjct 34659 ATC 34661 >seq810 Length=7590 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 4369 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 4428 Query 84516 CCCAC 84520 ||||| Sbjct 4429 CCCAC 4433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921600258021840