Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq134 266 6e-66 seq213 206 5e-48 >seq134 Length=62988 Score = 266 bits (294), Expect = 6e-66 Identities = 588/873 (67%), Gaps = 33/873 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || | || ||| | ||| ||||||||||||||| || | | |||||| || Sbjct 14797 ATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTCTGGACTGCG 14738 Query 42345 GAGGAGATTGACCTGGCCAAGGAC---ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 || ||| | ||| ||| | ||| | || | | |||| | || | || ||||| Sbjct 14737 GAAGAGCTGGACTTGGTACACGACCTCAAGGACTG--GGGAAAC-CTCACAGACAACGAG 14681 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 ||| |||| || | |||||||||| |||||| ||| ||||| || || ||| Sbjct 14680 CGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGAACGAG 14621 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 |||||||| | | || | || || || ||| |||||| || |||||||||||| Sbjct 14620 AACCTGGCTATGAACTTTAGCAATGAAGTACAGGTGCCTGAGGCTCGTTGCTTCTACGGC 14561 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACG 42578 ||||| || ||||| |||||| | ||||| ||||||||| | ||||||| ||||| Sbjct 14560 TTCCAAATTGCCATTGAGAACATCCACTCAGAGGTGTACTCG---CTGCTCATTGACACG 14504 Query 42579 TACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGC 42638 |||||| ||| | || ||| || ||| | || || ||||| || || || Sbjct 14503 TACATCAAGGACGCTGTGGAGAAGGACCACCTGCTGCGTGCAATTGAGACCATCCCGTGT 14444 Query 42639 ATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG----CAACGTT 42694 | | ||||||||| |||||||| | ||| ||| ||||| | | | Sbjct 14443 GTGACCAAGAAGGCGAGTTGGGCGCTAAGATGGTGCGA----CCCGAAAGTGTCCTCATA 14388 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 | ||| | || | || ||| | || || ||||| ||||||||||||||| |||| Sbjct 14387 CCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTG 14328 Query 42755 CTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 ||||||||||||||||||| || ||| || ||||| || || | |||||| ||||| | Sbjct 14327 CTCCATCTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCTGGTCTGAGCTTCTCCAACGAGC 14269 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 |||| || | || || || |||| | |||||||| || || ||| ||||| | | Sbjct 14268 TCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGA---AGC 14212 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 | | ||||| || || |||| || | | || ||| || || ||| |||||| Sbjct 14211 TGGTGACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGATCG 14152 Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993 | | ||||| | | | ||||| || ||| ||| ||||||||||| | |||| Sbjct 14151 AACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCA 14092 Query 42994 TGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGT----GCCAGATGGGTCTCAGC 43049 ||||| ||||||| ||| ||| || |||| || |||| || | || ||| || Sbjct 14091 TGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAG- 14033 Query 43050 CGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAG 43109 |||||||| | ||| || |||| ||||| | ||||| | |||||||| Sbjct 14032 ---ATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAG 13976 Query 43110 ACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 || ||||| ||||||||||| || | ||| ||| Sbjct 13975 ACTAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 13943 >seq213 Length=42570 Score = 206 bits (228), Expect = 5e-48 Identities = 881/1371 (64%), Gaps = 52/1371 (4%) Strand=Plus/Minus Query 244081 CAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCT 244140 ||||| | ||||||| | ||||||||||| ||||||||||| | ||| | ||| Sbjct 2745 CAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGA 2686 Query 244141 GCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCAT 244200 | ||| ||| ||||| ||| | || || || ||||| ||||| ||| |||||||| Sbjct 2685 GGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCAT 2626 Query 244201 GGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTC 244257 |||| ||||| || || | || ||||| ||| || | || | ||| | Sbjct 2625 CGGCGCGACCAGGAGCGAATTGCGCAGGCCGT---TCTTGACCACCTTCTCCTTAAGCGC 2569 Query 244258 GTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAG 244317 ||||||||||| | ||| |||| || ||| | |||||| || ||||| | Sbjct 2568 AGCCCAGTCCCACA-GACCG-GAGGAAGGCG----TGACGTTCCACATATCGAACTGGAA 2515 Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 | ||||||||| | || |||| | | ||| ||| || || | |||||| Sbjct 2514 GATACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAG 2455 Query 244378 CTTACAGCTCTCGTCG--AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATG 244435 || || | |||| | | ||||||||||||||||||||||| ||||||| | Sbjct 2454 -TTCCAT-TGACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGC 2397 Query 244436 TCGCGGGCCTTGCCG--CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTC 244493 || || |||| ||| | ||| | | | |||| | ||||| |||| || || | Sbjct 2396 TCACGCGCCT--CCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGC 2339 Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCA 244550 ||||||| || || || | || | ||| ||| ||||||| ||| || || | Sbjct 2338 CCTGCACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCG---AGCCTCAATAA 2282 Query 244551 CGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGT 244610 ||||||| ||||| ||||||| |||||||| |||||||| ||||||| |||||| | Sbjct 2281 CGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACAT 2222 Query 244611 CGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAAC 244669 | |||| || ||| | | || ||||| | ||| || ||| Sbjct 2221 CATACAGCTTCTTGTAGTTGAA----TA--------CGGCG-------TTCTCAACGAAC 2181 Query 244670 TCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGG 244729 | | ||| || ||| |||| |||||| ||||||||||| || | || |||| Sbjct 2180 TTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCC 2121 Query 244730 ACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789 | | || ||| | ||| || | || ||||| |||| ||| ||||| |||||| Sbjct 2120 ATCACTTCACAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTG 2061 Query 244790 GCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGG 244849 |||| |||||||||||| | |||||| ||| | || ||||| | ||| ||| | || Sbjct 2060 CGGTTGGCGGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGA 2001 Query 244850 ACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAG 244909 | | ||| || | ||| |||| ||| |||| || ||| || |||||| Sbjct 2000 ATAGCGAACCACAGCTGTTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTAC 1941 Query 244910 CGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCC 244969 |||| | ||||||||| |||||| ||||| || || ||| | || Sbjct 1940 TTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACAGACC-GGGAGCCTCGTT 1882 Query 244970 GGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGAT 245028 ||| || | | |||||||| ||| | ||| || | || |||||| || || || | Sbjct 1881 GGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCAC 1822 Query 245029 CCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAG 245088 ||| || || | ||| | ||| | | | ||| || ||| |||||| | ||| Sbjct 1821 CCACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAG 1762 Query 245089 CTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGG 245148 ||||| || ||||| || || ||||||| || |||| || | || | | || Sbjct 1761 ATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTT 1702 Query 245149 CCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAG 245207 || || || ||||||||||| | | | || |||| || | ||||| | | Sbjct 1701 GCGTTTACCTCCACCCTGGTCCACGTAACGTGCCG-TATCGTTAAACACTCGCAGCATGG 1643 Query 245208 GCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGT 245267 | | |||||||| || |||||| ||||| ||||||| | | | | || || Sbjct 1642 GGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGT 1583 Query 245268 TGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327 || || ||||| | || || || |||||||||| || || || | | Sbjct 1582 TGTGCATACTGATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAG 1523 Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387 |||| ||||| || || ||| || |||| | || ||||| || |||| | Sbjct 1522 TGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATT 1463 Query 245388 G-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | || | ||||| | | | |||||||| |||||| |||||||||| ||| Sbjct 1462 GTGGACGTGGGG-TACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAG 1413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944316512250720