Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq167 136 9e-27 seq134 111 3e-19 >seq167 Length=53098 Score = 136 bits (150), Expect = 9e-27 Identities = 417/633 (66%), Gaps = 25/633 (4%) Strand=Plus/Minus Query 333725 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 333784 || |||||||| ||| || || |||||||| |||||||||| || | ||||| || Sbjct 38288 CTCCACGAACTTGGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTAGTG 38232 Query 333785 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 333844 || || || || || | ||| ||||| | ||||||||| ||||| || | || || Sbjct 38231 AATGATGTTAGTACAGACCGTGTCAAGGAAGCTGGAGTCGTGGGACACCATGATGCTCGT 38172 Query 333845 AACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAGA 333902 |||| | ||||| ||||||| ||| || |||||| ||||| ||| | Sbjct 38171 CACGTTCGGCAGGTTCGTCAGGTAGTTC--TCGAGCCACGCAACGTTCTTGACATCCAAG 38114 Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962 ||||| |||||||| |||||||| || | | || ||| | ||||| ||||| || || Sbjct 38113 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 38054 Query 333963 GCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTG---GGGCAGATTGGCGCTCA 334019 | |||||||| ||||| || || ||||| ||| | | |||| ||| |||| Sbjct 38053 TCCAGTTTCATCTTCCAACCACCCGAAAGGGTGCCCACAGCCTGGGC---TTGCATCTCA 37997 Query 334020 ATATCAAAGCCAAC--CGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTT 334077 ||| | || || | || || |||| || | |||| | ||| Sbjct 37996 GCGGTGAAGTCCACGCCGGTA--AGCGTGTCAACGACCTCCTGGCGAGG---AGTGT--- 37945 Query 334078 CCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGT 334137 |||| | | |||||| |||||||| | | | || | | || || | | Sbjct 37944 CCTTCAGGTCCTCATCAAACAGGATGAAGTCCACAACGGACAGCTCGGCCTCCGAAGCTT 37885 Query 334138 CGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGAGGGGAACCCTTCAAGC 334196 | | ||| || ||| | |||| |||| | || ||| || ||||| || |||||| Sbjct 37884 GCAAGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCGCGC-GACGGGAAGCCGTCAAGC 37826 Query 334197 TGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGA 334256 || ||||| ||| |||||||| || || || ||||| ||||| || || |||||| Sbjct 37825 TGGCCGTTGGAAATGGCGCGCATAAGCGTAGACTTACCGCAACCGTTGGGACCGCACAGA 37766 Query 334257 CCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCA 334316 ||||| |||| |||||||| || | || | |||||||| ||||| | ||||| Sbjct 37765 CCGTAACGGTGGCCACGCTTTAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCG 37706 Query 334317 TATGCCAGAGAAAATTCACAATCACACAGATCC 334349 || || || || || ||||| | || || ||| Sbjct 37705 TAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 37673 >seq134 Length=62988 Score = 111 bits (122), Expect = 3e-19 Identities = 257/382 (67%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 || ||| ||||||| ||||| ||| ||| | |||||||| || | | || ||| Sbjct 14332 TTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAAC 14273 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| |||| ||||| || || || | ||| | | || | | || |||| || ||| Sbjct 14272 GAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAG 14213 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || || |||||| || | | || || | | || ||| || || || | | Sbjct 14212 CTGGTGACCAAGCTGCCGGA-GCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGAT 14154 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 |||| | || || | ||||| | | ||| ||| || ||||||||||| | || Sbjct 14153 CGAACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCT 14094 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | |||||||| || ||||| || |||||| | | |||||||| || | Sbjct 14093 CATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTG-TGTCCA 14035 Query 243645 AG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 || | |||||| ||||||||| |||| || ||||| | || || || || || || | Sbjct 14034 AGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGA 13975 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 ||||||||||||| |||||||| Sbjct 13974 CTAACTTCTTCGAGAAGCGTGT 13953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102852840890700