Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq213 156 5e-33 seq134 150 2e-31 seq129 84.2 3e-11 >seq213 Length=42570 Score = 156 bits (172), Expect = 5e-33 Identities = 467/714 (65%), Gaps = 15/714 (2%) Strand=Plus/Minus Query 114550 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 114609 ||| ||||| | ||||| ||||| ||||| ||| || |||||||| | |||| | Sbjct 2091 AATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAA 2032 Query 114610 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTG-GCA 114668 ||| |||||||| | || | | |||||||| ||| | || | || ||| Sbjct 2031 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACA-----GCTGTTGAGCA 1977 Query 114669 CAG--TGGCGTT--GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCT 114724 | || | | ||| || || || ||||||||| | || | || ||||| Sbjct 1976 TTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCC 1917 Query 114725 TCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA 114784 || ||| | ||| | || || || |||| | || ||||| | | ||| | ||| Sbjct 1916 TCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCA 1857 Query 114785 CCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGA 114844 |||| |||||||||||||| || || || | ||| ||||| |||| | || || Sbjct 1856 TTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGT 1797 Query 114845 -CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 114903 || | || || | | || || || |||| ||||| || || | | ||| || Sbjct 1796 GCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGC 1738 Query 114904 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTAC 114960 ||||||||||||||| || | ||| | ||| ||||| || || ||| |||||| || Sbjct 1737 GTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCAC 1678 Query 114961 ATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 115020 || | || || | ||||| || || ||||| || ||||| || | || ||| || Sbjct 1677 GTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTT 1618 Query 115021 TGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCC 115080 || || || || ||| | |||| || | || || || ||||| || || Sbjct 1617 CGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCC 1558 Query 115081 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTC 115140 ||||||||| ||||| ||| |||| | ||| || | || || || || || ||||| Sbjct 1557 TGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTC 1498 Query 115141 ACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 115200 | ||| | || | | |||||| |||| |||||| | ||| |||||||| ||||| Sbjct 1497 ATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAA 1438 Query 115201 GAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 115254 || || || || |||||| |||| | ||| ||||| ||||| ||||| Sbjct 1437 CAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 1384 >seq134 Length=62988 Score = 150 bits (166), Expect = 2e-31 Identities = 352/527 (67%), Gaps = 12/527 (2%) Strand=Plus/Plus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||||||||| ||||| || | | ||| | Sbjct 13937 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCAT 13996 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | ||||| |||||||| ||| | || | | ||| |||| | | || Sbjct 13997 GTCCATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAG 14056 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 || || || | ||| |||||||||||| |||| | | |||||||| ||||| || Sbjct 14057 CAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 14116 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | |||||||| ||| | ||| | | || || | ||| || || || | || Sbjct 14117 CTCCACTGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT 14176 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG---- 126047 |||| | | | || || ||| || ||| |||| | || | Sbjct 14177 CTCGTGCACACGCTGCTCC---GGCAGCTTGGTCACCAGCTTC--GAGTACAACAGACAA 14231 Query 126048 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 |||| ||| ||| | ||| || ||||| ||||| || || ||||||| ||| || Sbjct 14232 GCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCA 14291 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| |||||||| | |||||| || | ||||| || ||||||||||||||| Sbjct 14292 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATT 14351 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTT-GTGTCAAA 126225 ||||||||| || || || | |||||||| | | ||| | ||||| | ||| | Sbjct 14352 CCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCA 14410 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 126272 ||| | | |||||| |||||| || | |||||||| ||||| Sbjct 14411 CCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCT 14457 >seq129 Length=130999 Score = 84.2 bits (92), Expect = 3e-11 Identities = 261/394 (66%), Gaps = 24/394 (6%) Strand=Plus/Minus Query 172580 AGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAACCA 172639 || || || |||||||||| |||||| | ||| | | ||||||||||| || ||| Sbjct 58545 AGTAGTGACGGCCAGAAGTGGTGGATGAGATTGATCACCAGACCCTTAATATGACTGCCA 58486 Query 172640 TCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGC---TCGGAAACATC 172695 |||| ||| ||| | ||| ||||| || | ||||| || |||| ||| || Sbjct 58485 TCGTGATCTTGATCTGCCATGATCATCAGGTGGCCATACCGCAAGCCTTTCGTGGAC--- 58429 Query 172696 TTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATT--GAA-CTCTTG 172752 | |||| | || | | || || |||| |||||| | || ||| ||||| Sbjct 58428 -TCATACATTTGGCCATACTTGAGTCC-AAGAA--TCTTGACCACGTTTTGAATCTCTTC 58373 Query 172753 GTTTGATGTGAGTTGCGCCACTGAA--GCATCGCGGACATTTTTACACTTCCCACGGAGA 172810 |||| || ||| | | || || || || |||||| ||| ||||| || Sbjct 58372 GTTTTTCAGGATTTGGG--AGTGGCTTGCCTCACGCACATTTAGCATCTTACCACGCAGC 58315 Query 172811 GGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTC 172870 || || |||||||||| || | ||||| || | ||||||| | || || | || || Sbjct 58314 GGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCACAGCTACTGTTTTA 58255 Query 172871 GCGGAATCACCCTCCGTCACGATGAGCGTACA---CTTTCCAGATTGTGCCGTCCCCGCC 172927 || ||||||||||| || | ||| || || || ||| || | || || || || Sbjct 58254 GCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTTCGCAGTGCCGGCG 58198 Query 172928 TTGTTCGCATCGTCCAACTTGGGAATACCAGTAA 172961 | ||| |||||||| | ||| |||||||| |||| Sbjct 58197 TGGTTGGCATCGTCTAGCTTTGGAATACCCGTAA 58164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597339248579760