Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq134 120 3e-22 seq241 107 2e-18 seq213 93.3 4e-14 >seq134 Length=62988 Score = 120 bits (132), Expect = 3e-22 Identities = 282/423 (67%), Gaps = 11/423 (3%) Strand=Plus/Minus Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478 || ||||| | || || || ||| |||| | ||||||| | | || | | || Sbjct 14359 GTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGT 14300 Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538 | ||||| || |||| ||| ||||||| | || || || ||||| ||||||| Sbjct 14299 CTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAGGTATGCACACA 14240 Query 52539 GACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA----CAC 52594 |||||||| || || | ||| || || |||||| || || |||| | Sbjct 14239 GACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACC---AAGCTGC---CGGAGCAGCGT 14186 Query 52595 GATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCT 52654 | | ||| || || || || ||| |||||| | |||||| | | | | |||| Sbjct 14185 GTGCACGAG-ATTATCCGTGACGCTGTGAAGATCGAACACGAGTTTGTGAGCGACTCGCT 14127 Query 52655 GCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGC 52714 || || |||||| | ||||||||| || | ||||||| ||||||| ||||| ||||| Sbjct 14126 CCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGC 14067 Query 52715 GGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGA 52774 || || ||| || ||| || | | ||| || ||||| || |||||||| Sbjct 14066 AGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAGATCTACAACGTCAAGAACCCGTTTGA 14007 Query 52775 GTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGA 52834 | ||| ||| || || || |||||||||| ||||| ||||||||||| || ||||| Sbjct 14006 CTGGATGGACATGATCTCTCTACAGGGCAAGACTAACTTCTTCGAGAAGCGTGTGGGCGA 13947 Query 52835 GTA 52837 ||| Sbjct 13946 GTA 13944 >seq241 Length=42966 Score = 107 bits (118), Expect = 2e-18 Identities = 148/204 (73%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 138416 TGTTTGACTC---CTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTT 138472 |||||| ||| ||| || ||||||||||| | || || ||||||||| || | Sbjct 962 TGTTTGTCTCACCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCT 903 Query 138473 TACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTT 138532 | |||| |||| |||||||| ||||| || || || || || ||||| |||||| | Sbjct 902 TGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCT 843 Query 138533 GTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTC 138591 | || | |||| || | | |||| | || |||||| |||| ||| | || || || ||| Sbjct 842 GCTTGACATTG-TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTC 784 Query 138592 AGAGTTTTTACAAAAATCTGCATG 138615 || || || ||||| ||||||||| Sbjct 783 AGGGTCTTCACAAAGATCTGCATG 760 >seq213 Length=42570 Score = 93.3 bits (102), Expect = 4e-14 Identities = 478/750 (64%), Gaps = 23/750 (3%) Strand=Plus/Minus Query 153809 GCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGC 153868 |||||| || | |||||| ||| |||| ||| ||||| || || |||| ||| Sbjct 1959 GCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTA 1900 Query 153869 GAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCG 153928 || |||||| || | ||||| | || |||| | | | ||| | || || Sbjct 1899 CAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTT 1840 Query 153929 CATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT--TGCAATCCTCC 153986 |||||| |||||||||||||| || || || | | ||| || || |||| ||| Sbjct 1839 CATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAG--CTC- 1783 Query 153987 GCGCCCATG----TTGCGTTTCAGATTGA-GCACGCTATAGATGTCGGCGTGCCAGGGTT 154041 | ||||| ||||| ||||| | | || | | | | || |||||||| |||| Sbjct 1782 GTTACCATGGTTCTTGCG---CAGATCCAAGAACTCAA-ACACATCAGCGTGCCACGGTT 1727 Query 154042 CAATGTAGACGGCCAGGGCACCTTTACGCTT---TCCGCCCTGATCGACGTGGCGCACCA 154098 | | || | || | | || || || || ||| ||||| || |||| || || Sbjct 1726 CCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACGTGCCG 1667 Query 154099 TATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGA 154158 ||| ||| || || |||| |||||| | |||| | | | |||||| || || Sbjct 1666 TATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGA 1607 Query 154159 TCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTG 154218 | | |||| || || | | |||| | | ||||||||| || | |||| | Sbjct 1606 TGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCCACTTGG 1547 Query 154219 ATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGC 154278 | ||| || || | ||| || || ||||| || || || || | | | Sbjct 1546 AGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGG 1487 Query 154279 CGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGAC 154338 | | |||||| |||||| ||| ||| ||| | || || || || || ||||| Sbjct 1486 CCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGTGGGGG 1427 Query 154339 TCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGA-TGGCGTCTTCGATA 154397 | ||||| || || | |||||| ||| | ||| || || | || || ||| ||| Sbjct 1426 TGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTT-GATG 1368 Query 154398 TCATCGCC--GTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGA 154455 | ||| | ||| ||||| || || |||||||||| ||| ||||| |||||||| | | Sbjct 1367 T--TCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCA 1310 Query 154456 CTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGT 154515 || | || | ||||||||||| | || || || || | || ||||| | || Sbjct 1309 CTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGT 1250 Query 154516 ATTCAAAATCTAGCTCATGAGCGATGGCCG 154545 ||||||| ||| | ||||| ||||||| Sbjct 1249 ATTCAAAGTCTCGGTCATGGATAATGGCCG 1220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250477295840