Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq241 107 2e-18 seq134 84.2 2e-11 >seq241 Length=42966 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 948 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 889 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || || |||||||||||| |||||||||||||| | || Sbjct 888 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 829 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||||| ||| || |||| || | || ||||| ||||| || || ||||| Sbjct 828 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 769 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 768 ATCTGCATG 760 >seq134 Length=62988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | ||||||| || || || || ||||||||||| | Sbjct 14110 GGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTAT 14051 Query 47472 CAGCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 ||| || ||| ||||| ||| || | |||| || || || | ||| ||| || Sbjct 14050 TCGCTTGGTGTGTCC-AAGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGAT 13992 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || || |||||||||| ||||| ||||||||||| || ||||| || Sbjct 13991 CTCTCTACAGGGCAAGACTAACTTCTTCGAGAAGCGTGTGGGCGAGTA 13944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489376093280