Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq134 208 8e-49 seq241 127 2e-24 seq202 93.3 4e-14 >seq134 Length=62988 Score = 208 bits (230), Expect = 8e-49 Identities = 416/610 (68%), Gaps = 6/610 (1%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || ||||||||||| |||| || || || | |||||| |||||| || Sbjct 14221 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGA 14280 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | ||| || |||||||| || || || |||||||| || |||| | || ||||| Sbjct 14281 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 14340 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| ||||| || || || || |||| || ||||| | | | || ||| Sbjct 14341 AGAAGAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 14400 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | | || ||| | |||||||| ||||| | | || ||||| || || || | Sbjct 14401 TCGGGTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 14460 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 | || || || || ||||| | | | | ||| ||||| ||||| || Sbjct 14461 TTGCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 14520 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 | |||| || ||||| | |||||| ||||| ||||| |||||||| ||||| || |||| Sbjct 14521 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCT 14580 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTCGA--CCAGATTTTCGTTGACGATGCCGTC 133304 | |||||| ||||| | || ||| | || |||| || ||||| |||||||| || Sbjct 14581 CAGGCACCTGTACTTCATT-GCTAAA-GTTCATAGCCAGGTTCTCGTTCACGATGCCATC 14638 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364 |||||||| || ||||||| |||||||||||||| || ||||||||||| | | | Sbjct 14639 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 14698 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 ||||||| | | | | || | || ||||| ||| || | ||||| || |||| Sbjct 14699 TCCCCAGTC-CTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCT 14757 Query 133424 CGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGC 133483 | || || |||||||| ||||| ||| | || ||||| || | ||| || ||| Sbjct 14758 CCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAATAGCACGAAGCGGT 14817 Query 133484 GGGGGTTTTC 133493 |||||||| Sbjct 14818 TCGGGTTTTC 14827 >seq241 Length=42966 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| ||||||| ||| | | Sbjct 761 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 820 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||||| | | | | || | ||||||| ||||| ||||||||||| | ||||| Sbjct 821 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAG 880 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 881 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 940 Query 38424 ATCCAAAAGG 38433 ||||| |||| Sbjct 941 ATCCAGAAGG 950 >seq202 Length=44642 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/127 (79%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 38346 GGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCG 38404 ||||| |||||| ||||| ||||| || || | ||| ||||| |||||||| |||| || Sbjct 8798 GGAAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCG 8740 Query 38405 CACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGA 38463 ||| || |||||||||||||| ||||| ||| ||||| || ||||||||||| || Sbjct 8739 CACTCTGTCGGACTACAACATCCAGAAGGAGAGC-ACGCTCCACCTGGTGCTGCGTCTGC 8681 Query 38464 GAGGCGG 38470 | || || Sbjct 8680 GTGGTGG 8674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160783348480