Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq94 102 3e-16 >seq94 Length=74940 Score = 102 bits (112), Expect = 3e-16 Identities = 376/585 (64%), Gaps = 8/585 (1%) Strand=Plus/Plus Query 451904 GTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTT 451963 ||||| ||||| || || || || || || || | || | || || | || |||| Sbjct 69780 GTGCTGGTAGGCGGGTCCACGCGTATCCCCAAGGTGCAGCAATTGCTGACGGATTTTTTT 69839 Query 451964 GGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCA 452023 || ||| |||| | ||| | | || || || |||||||| || | |||||| || Sbjct 69840 CACGGGAAAGAACTGTTCAAGTCCATCAACCCGGACGAAGCTGTGGCGTTCGGTGCTACA 69899 Query 452024 GTTCAAGCAGCTATTCTAACAGGTTCAGATGAT-----GAAAAATTAGGAG-ATATTCTG 452077 ||||| || || ||||||| || | | ||| | || | | || || | ||| Sbjct 69900 GTTCAGGCGGCCATTCTAAGTGGGGCTGGTGACACCTCGTCCAAGTTGCAGGATCTGCTG 69959 Query 452078 TTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAAT 452137 || | || || | || ||||| || ||| | || || || |||||| | ||||| | Sbjct 69960 CTACTGGACGTGGCGCCACTATCGCTCGGACTGGAGACTGCAGGTGGAGTCATGACGACA 70019 Query 452138 TTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGT 452197 | || || || | |||||| ||||||| || || || || Sbjct 70020 CTGATCGCGCGTAACACCACAGTTCCTTCTAAAAAGTCGCAGACGTTCTCGACGTACTCG 70079 Query 452198 GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGAT 452257 |||||||| || ||||| ||||| ||||| ||||| ||||| | ||||| || || Sbjct 70080 GATAACCAGCCTGGTGTGTTGATTCAGGTGTTCGAAGGTGAACGGACGATGACTCGTGAC 70139 Query 452258 AATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCT 452317 ||| | ||| || | || | | | ||||| || |||| | || | || Sbjct 70140 AATCACCTACTGGGCAAGTTCAATTTGGACGGTATTCCGCCAATGCGCCGTGGTATACCG 70199 Query 452318 CAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAA 452377 ||||| || | |||| ||| | ||||| ||||||||||| |||||| || || || Sbjct 70200 CAAATCGATGTGACCTTCGATATCGATGCGAATGGTATTCTCAATGTGTCAGCCGTCGAG 70259 Query 452378 AAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAA 452436 ||||| |||| || |||| || || || || || || || || ||| |||| | Sbjct 70260 AAATCGACTGG-CAAGGAGAACAAGATCACCATCACGAACGACAAGGGTCGTCTATCGCA 70318 Query 452437 AGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGA 452481 || || ||||| ||||||| || || || || |||||||| Sbjct 70319 GGACGAGATTGACCGCATGGTAGCAGAGGCTGATAAGTTCAAGGA 70363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975669746699576