Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq94 109 4e-18 seq114 87.8 1e-11 seq123 86.0 5e-11 >seq94 Length=74940 Score = 109 bits (120), Expect = 4e-18 Identities = 435/675 (64%), Gaps = 20/675 (3%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 ||||||||||| || || ||||| || |||| | |||| |||| || || | ||| Sbjct 69490 ACAAGACGATTGTCGAAGTCTTCGCCACCCAGATGCGTATCACCTGCAGTGGCCTTCACT 69431 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | ||| || |||| | || |||| || ||| ||| || || |||| || Sbjct 69430 TCGAAGATTCCTTCCTCAATACTCAGCAGAGAGACGTCAAAGGTGCCGCCGCCCAGGTCG 69371 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 ||||| || ||||| || | | || || || ||||| || |||| |||||| Sbjct 69370 AAAATGAGCACATTGTGCTCCC---CACGCTTCTTGTCCAGACCGTATGCAATGGCAGCA 69314 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || ||||||||||| ||||| | || || || | ||||| || || ||||| || Sbjct 69313 GCCGTTGGTTCATTGATAATGCGCAGCACGTTCAATCCAGCGATGGCGCCGGCATCCTTC 69254 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 || || || | || || ||||| ||||| || || || || | || |||| | ||| Sbjct 69253 GTCGCCTGGCGCTGCGAGTCGTTGAAATACGCCGGGACGGTCACGACCGCATTCTTCACT 69194 Query 518315 TCTTTACCAATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | || || |||| ||||| ||| | ||| || | | | ||| || || | Sbjct 69193 TGCTTGCC--GATAAACGCTTCGGCCACCTCACGCATCTTGATCAGCACCATGGACGAGA 69136 Query 518373 TTTGTTCTGG--GGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTT 518429 | | || || |||| | ||| || || |||| || || | | | || | Sbjct 69135 TCTCCTCCGGTTGGAACGT--CTTCGACTCGCCCTTGAACTG-CACCACCACCTGAGGCT 69079 Query 518430 TATTACC---AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTT- 518485 |||| | | || | || || || ||||| | ||| ||||| || || ||||| Sbjct 69078 TATTGTCCGGACCACGCACCACCTTGAACGGCCAATGTTTGATATCCGACTG--CACTTC 69021 Query 518486 -TGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATT 518544 ||| || | | ||| || | || || || || || | || ||| | ||| Sbjct 69020 CAAGTCCGAGAACTTGCGACCGATCAGACGCTTGGCGTCGAACACCGTGTTGTGCGCATT 68961 Query 518545 AATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAAC 518604 || || | || | ||||| || ||||| |||||| | || || || || || | ||| Sbjct 68960 CATGGCCACCTGGTTCTTGGCGGCGTCTCCGATCAGACGCTCCGTGTCCGTGAAGGCAAC 68901 Query 518605 ATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTG 518664 || || || ||||| || |||||||| ||||| || || ||||| || | || || Sbjct 68900 GTACGAAGGGGTTGTACGGTTACCTTGGTCATTGGCGATGATTTCCACACGGTCGTTCTG 68841 Query 518665 CCATACACCTACACA 518679 ||| ||||| || || Sbjct 68840 CCACACACCCACGCA 68826 >seq114 Length=67259 Score = 87.8 bits (96), Expect = 1e-11 Identities = 201/303 (66%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || ||||| ||||| | || | || ||||| || | ||| | || Sbjct 61253 TCAAAGTCCTCACCGCCCAAGTGCGTGTCACCGTTGGTAGCAAGCACCTCGAACACACCG 61194 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 | |||| || || ||| || ||||| ||| || ||||| | ||||| | || ||| Sbjct 61193 CCGTCAATAGCCAGAAGCGTCACATCGAAGGTACCGCCACCAAGGTCAAAGACCAGCACA 61134 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||| | || | | || || |||| ||| || |||| ||||||||||| || || Sbjct 61133 TTCTTCTCGCCCTGTGCCTTCTTGTCAATACCGTAAGCAATGGCAGCAGCAGTAGGCTCG 61074 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 ||||| || | | ||| | ||||| ||||| | || ||||| || || || || | Sbjct 61073 TTAATGATACGCTGCACAGTCAGACCGGCAATGGTACCGGCATCCTTGGTAGCCTGACGC 61014 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || | ||||| || || ||||| || |||| || || ||| ||||| ||||| Sbjct 61013 TGAGCGTCGTTGAAGTAAGCAGGCACTGTAACCACAGCGTCAAACACTTCACGGCCAATG 60954 Query 518327 TAA 518329 ||| Sbjct 60953 TAA 60951 >seq123 Length=65206 Score = 86.0 bits (94), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 |||||||| ||||||||| | || || | ||||| || ||||||||| | || || ||| Sbjct 3921 GGTAAAGAGGGTCGTATTCGTGGTAACCTAATGGGCAAGCGTGTCGATTTTTCGGCGCGT 3980 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964 || || || || |||| || || |||||| | || ||||||||||||| Sbjct 3981 ACTGTCATCACCGCTGACCCTAACATTGCTATTGATCAAGTTGGTGTTCC 4030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780727024028932