Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq7 147 3e-30 seq129 105 8e-18 seq134 89.7 6e-13 >seq7 Length=251020 Score = 147 bits (162), Expect = 3e-30 Identities = 290/420 (69%), Gaps = 17/420 (4%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| |||||||| ||||| || || | | || | || ||||||||| ||||||| Sbjct 185850 ATCTGCCGATCGAATCGACCAGGACGCAAAATGGCCTTGTCTAGAATATCGGCACGGTTC 185909 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| |||| | || || | || |||| | || |||||| ||||| || || Sbjct 185910 GTACCGGCGAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCAACCAGC 185966 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG--GGCATACC-ACCTGCCGAACGC 11670 |||||||| | || | ||||||||| |||||| | || | | |||| ||| Sbjct 185967 AGCTGGTTCAATGTGTTTTCACGCTCGTCGTTGCCGCCGGAAAAGTTACCTTTGCTACG- 186025 Query 11671 TTCTTAC---CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 | | || | |||||||| || ||||| ||||| || |||||||| ||| || || Sbjct 186026 TGC--ACGTGCAACAGCGTCGATTTCATCAATGAACACAATACACGGAGCGTTCGCTCGC 186083 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 |||| | ||| | ||||| |||||| || || ||||| ||||||||||||| ||| Sbjct 186084 GCCTCCTTGAACAAGTCACGCACACGCGACGGACCCACACCGACGAACATCTCAATGAAA 186143 Query 11788 TTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | || | || | |||||| ||| || || | | ||||||||| | ||| ||| || Sbjct 186144 TCTGAACCGGAGATACTGAA-GAATGGCACGCTGGCCTCACCAGCCGTTGCTTTAGCTAG 186202 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || || ||||| |||||||| | ||| | || || || || ||||||||| || || Sbjct 186203 CAGCGTTTTACCTGTACCAGGCGGTCCAACAAGCAGCGCACCCTTGGGGATCTTCGCCCC 186262 >seq129 Length=130999 Score = 105 bits (116), Expect = 8e-18 Identities = 123/165 (75%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 ||||||||| || |||||||| || || | ||||| || ||||||| |||||| | || Sbjct 58327 CTTACCACGCAGCGGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCAC 58268 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACA---CTTTCCAGACTG 168545 ||| | ||||| ||||||||||||||||| | ||| ||||| || ||| || || Sbjct 58267 AGCTACTGTTTTAGCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTT 58211 Query 168546 TGCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 || || || || | ||| |||||||| | || || ||||| || Sbjct 58210 CGCAGTGCCGGCGTGGTTGGCATCGTCTAGCTTTGGAATACCCGT 58166 >seq134 Length=62988 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| || | |||||||| ||| |||||||| || ||||| || ||| Sbjct 14232 GCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCA 14291 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 |||||||| || | ||||| ||||| ||||||| ||||| || || |||||||| Sbjct 14292 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATT 14351 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 ||||||||| || || || | |||||||| Sbjct 14352 CCCTCCACAGCTGCAAATGCCAGAAGACGCTC 14383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588961849851600