Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq213 156 5e-33 seq134 120 4e-22 seq169 87.8 2e-12 seq129 82.4 9e-11 >seq213 Length=42570 Score = 156 bits (172), Expect = 5e-33 Identities = 614/954 (64%), Gaps = 19/954 (2%) Strand=Plus/Minus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || || || | || ||||| ||||| || ||| |||||| || |||| Sbjct 2182 ACTTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACT 2123 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTT---AATCGTCCCCAAATTCTTTTGGTTAC 106568 | | | ||| ||||||||| ||| |||||| || | |||| || ||| Sbjct 2122 CCATCACTTCACAGCACAAGTTG---CTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAG 2066 Query 106569 TCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACT 106628 ||| |||| || |||||||| | |||| | ||| |||||||| |||| | | Sbjct 2065 ACTTGCGGTTGGCGGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGT 2006 Query 106629 TGAGAATTGCCTTCCACACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCTCCGC 106686 ||||| || ||||| | || || | | ||| ||| || || || Sbjct 2005 CCAGAATAGCGAACCACAGCTGTTGAGCATTGATTGTCTTGCG--GGCGCGGCCTTCACG 1948 Query 106687 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTG 106745 ||||||||| | || | || |||||||| ||| | || ||| | ||||| || | Sbjct 1947 CTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCC-CAGCACTCGTACAGACCGGGAG 1889 Query 106746 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 ||| || |||||||| | | ||| | ||| |||| || ||||||||||| || | Sbjct 1888 CCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGAT 1829 Query 106806 CTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTG 106864 | || | |||||| | | || | || | | ||| | || || ||| ||| ||||| Sbjct 1828 CCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCT-CGTTACCATGGTTC 1770 Query 106865 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 106924 || | || | |||||| | | ||| |||||||| || || ||||| | || | Sbjct 1769 TTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAAT 1710 Query 106925 GATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 106981 |||||||| || || ||| | || | || || || || || ||||||| || || Sbjct 1709 GATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGC 1650 Query 106982 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGC 107040 ||||| || || || || | || || || || || || || || | ||| | || Sbjct 1649 AGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGT-AGCTGTTAGTAGC 1591 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 || | | || || || ||||| || || |||||||| ||||| |||||||| Sbjct 1590 TCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTG 1531 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160 | ||||| |||| || || | || ||||| |||| |||| | | |||||| Sbjct 1530 TTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGA 1471 Query 107161 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 107220 |||| || || | ||| |||||||||||||| || || || || ||||| |||| | Sbjct 1470 AGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAA 1411 Query 107221 ACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 ||| ||||| ||||| ||||| | | | | |||| | ||||||||| Sbjct 1410 TTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCC 1351 Query 107281 GATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTG 107340 | ||||| ||||| | ||| | ||||| ||||| | |||| | || || Sbjct 1350 TAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAA 1291 Query 107341 AAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 ||||| | | |||| || || || | ||||| ||| | | ||| |||| || Sbjct 1290 GAGATATCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGTATTCAAAGTCTCG 1237 >seq134 Length=62988 Score = 120 bits (132), Expect = 4e-22 Identities = 330/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||| ||||| || | || || | ||||| Sbjct 13944 TACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATC 14003 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 ||||||| || ||||| |||| | || | ||| |||| | || || || Sbjct 14004 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 14063 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 || | ||| |||||||||||| | |||| | | |||||||| ||||| || | | Sbjct 14064 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 14123 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 117225 ||||| | ||| | ||| | | || |||| || || || | || |||| Sbjct 14124 GGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 14183 Query 117226 ATA----GTTTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280 | | | | ||| || | |||| || || || | | | | ||||| | Sbjct 14184 ACACGCTGCTCCGGCAGCTTGGTC----AC-CAGCTTCGAGTACAACAGACAAGCAAAGT 14238 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| | ||| ||||| || ||| || || || ||||||| || || ||||||| Sbjct 14239 CTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGA 14298 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 |||| |||||||| | ||| | || | ||| || || || ||||||||||| ||||||| Sbjct 14299 GACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 14358 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATTTC 117459 || ||||| || | ||| ||||| | | | ||| || ||||| | ||| ||||| | Sbjct 14359 CAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCTT 14417 Query 117460 ATTGCCCATTTCGCCTTCTT 117479 | ||||| |||||||||| Sbjct 14418 AGCGCCCAACTCGCCTTCTT 14437 >seq169 Length=54812 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 52210 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 52151 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 52150 CCGGTAGGAGCTT 52138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 53202 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 53143 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 53142 CCGGTAGGAGCTT 53130 >seq129 Length=130999 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 169361 CTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGAC 169420 ||| ||||| || ||||| || || |||| || | |||||||||| ||||| | || Sbjct 58327 CTTACCACGCAGCGGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCAC 58268 Query 169421 CGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACA---CTTTCCAGATTG 169477 || | ||||| |||||||||||||| || | || || || || ||| || | Sbjct 58267 AGCTACTGTTTTAGCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTT 58211 Query 169478 CGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAA 169524 ||| || || || | ||| || ||||| | ||| |||||||| |||| Sbjct 58210 CGCAGTGCCGGCGTGGTTGGCATCGTCTAGCTTTGGAATACCCGTAA 58164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966625711280