Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq94 98.7 8e-15 >seq94 Length=74940 Score = 98.7 bits (108), Expect = 8e-15 Identities = 188/275 (68%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 552312 CCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAAT 552371 || ||||| || || | || || | || || | ||||| | || |||| | || Sbjct 69975 CCACTATCGCTCGGACTGGAGACTGCAGGTGGAGTCATGACGACACTGATCGCGCGTAAC 70034 Query 552372 ACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCT 552431 || || |||||| |||||| || | || || ||||| || ||||| || ||| | Sbjct 70035 ACCACAGTTCCTTCTAAAAAGTCGCAGACGTTCTCGACGTACTCGGATAACCAGCCTGGT 70094 Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491 || ||||| | || ||||| ||| | | | ||| || ||| | | ||| || Sbjct 70095 GTGTTGATTCAGGTGTTCGAAGGTGAACGGACGATGACTCGTGACAATCACCTACTGGGC 70154 Query 552492 ACTTTTAATTTAGAAGGTATTCCTCC--TGCTCCTCGTGGAGTACCGCAAATTGAAGTTA 552549 | || ||||| || |||||||| || ||| || |||| |||||||||| || || | Sbjct 70155 AAGTTCAATTTGGACGGTATTCCGCCAATGCGCC--GTGGTATACCGCAAATCGATGTGA 70212 Query 552550 CTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 | |||||||||||||| ||||| ||| | |||||| Sbjct 70213 CCTTCGATATCGATGCGAATGGTATTCTCAATGTG 70247 Score = 87.8 bits (96), Expect = 1e-11 Identities = 112/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 550385 CAAG-AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCA 550443 |||| |||| | | |||| || | || || || || ||||| || ||||| || || || Sbjct 69188 CAAGCAAGTGAAGAATGCGGTCGTGACCGTCCCGGCGTATTTCAACGACTCGCAGCGCCA 69247 Query 550444 AGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 || || || ||||| || || |||||| | || || || || |||||||||||||| Sbjct 69248 GGCGACGAAGGATGCCGGCGCCATCGCTGGATTGAACGTGCTGCGCATTATCAATGAACC 69307 Query 550504 TACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || |||||||| ||||||| || || || || Sbjct 69308 AACGGCTGCTGCCATTGCATACGGTCTGGACAA 69340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029194355971780