Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq73 196 4e-45 >seq73 Length=89798 Score = 196 bits (216), Expect = 4e-45 Identities = 454/669 (68%), Gaps = 29/669 (4%) Strand=Plus/Minus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 ||||| || ||||| | |||||| ||||| || || || | |||||| ||| || || Sbjct 88110 AGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGGATAAATTCGCCA 88051 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTAGCTGGCGATGTT 29921 |||| | || | || || |||| || || ||| || || | || ||||||||||| Sbjct 88050 GGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTT 87992 Query 29922 AAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC 29981 || || || ||||| |||||||| |||| | |||||| | ||||||||| | ||| || Sbjct 87991 GAACGGCACGCCGAGGCCCATGTCAGCCGAACGCTGGTACATCTGACACGATAACTCGCC 87932 Query 29982 GTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCA---A 30038 || ||||||||||||||| | |||| || || || || ||||| | || | Sbjct 87931 ATCCGCCACGTAAAACTGACAAAACATGTGACATGGTGGCAGCGCCAT----CTCATTGA 87876 Query 30039 G-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTTCCT--GA 30094 | || || ||||| || ||| | || || | ||| || || |||| | | Sbjct 87875 GATCCGCTGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGGTTTGTGCGTAGTT 87816 Query 30095 TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATG 30153 || || ||| | || || |||||||||||| || | ||||||||| ||| Sbjct 87815 TGTGGATCAC----CTCAGCAAGTTGATCCACCCCCTGTCCAGTGTAGTCTGCATGCATA 87760 Query 30154 TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30213 |||||||||| ||||| || || | ||||||||| || ||||| |||||||||||||| Sbjct 87759 TCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATACACTGGTCCCAGGTCTCCT 87700 Query 30214 TCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAG 30273 ||||||| || | || | |||||||| | |||| || || ||| | |||||| Sbjct 87699 ACTTCCCTCGACTGCAGTCCACGACTGTCCAAATACTCTCGCGATCCATTGCCATCCCAG 87640 Query 30274 ATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30333 || | | |||||| ||| | | | || ||| || | ||||||||| Sbjct 87639 ATATGAATGTCCTTCTGCTGCAGCGTATGCGCACTCGTATCCCCACTAATGAACCACAGT 87580 Query 30334 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TG 30389 | |||||| | || | |||| || || ||||| ||||| || | || ||| | Sbjct 87579 AATTCCTCCGCCACACCTCTCCAGAATACTCTCTTAGTCGTCAGCAACGGGAACACGTTA 87520 Query 30390 TCCCTTGAGGCCGTACATGGC--CTGAGAACCAAACACGGACAAGACTCCC-GTGCCCGT 30446 |||| | || | || | || ||||| ||||| || ||||| | |||| || ||||| Sbjct 87519 TCCC-TCAGAC--TAAAGCGCATCTGAGCCCCAAATACCGACAA-AGTCCCTGTCCCCGT 87464 Query 30447 CCTGTCTCC 30455 || |||||| Sbjct 87463 CCGGTCTCC 87455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408608028388106